View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4559_low_12 (Length: 364)
Name: NF4559_low_12
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 48145653 - 48145990
Alignment:
| Q |
18 |
atccacatatcttcagagcttaaaagctgtttcatatccaaataaataaataaacaatgaattaatatttatcttttgcatataagaaattgaaaaatgg |
117 |
Q |
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| T |
48145653 |
atccacatatcttcagagcttaaaagctgtttcatatccaaataaataaataaacaatgaattaatatttatcttttgcatataagaaattgaaaaatgg |
48145752 |
T |
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| Q |
118 |
aagtttctcaaattgttaccttaatttgaagctgcaaaaacttcacatattggacagcttcctcaagcatagtgctaatatctacctacaattcacaaac |
217 |
Q |
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| T |
48145753 |
aagtttctcaaattgttaccttaatttgaagctgcaaaaacttcacatattggacagcttcctcaagcatagtgctaatatctacctacaattcacaaac |
48145852 |
T |
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| Q |
218 |
aatgaaaaattgaaaatttgtacaccttaaccaattgttagtttaatttccattaattaattaagaaatctaccttagttccatttgggacaagggtttg |
317 |
Q |
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| T |
48145853 |
aatgaaaaattgaaaatttgtacaccttaaccaattgttagttcaatttccattaattgattaagaaatctaccttagttccatttgggacaagggtttg |
48145952 |
T |
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| Q |
318 |
caagattctcaatctttcatttattctttctcttctct |
355 |
Q |
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| T |
48145953 |
caagattctcaatctttcatttattctttctcttctct |
48145990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 39 - 354
Target Start/End: Original strand, 48150525 - 48150845
Alignment:
| Q |
39 |
aaaagctgtttcatatccaaataaataaataaacaatgaattaatatttatcttttgcatataagaaattgaaaaatggaagtttctcaaattgttacct |
138 |
Q |
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| T |
48150525 |
aaaagctgtttcatatccaaataaataaataaacaatgaattaatatttatcttttgcatataagaaattgaaaattggaagtttctcaaatagttacct |
48150624 |
T |
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| Q |
139 |
taatttgaagctgcaaaaacttcacatattggacagcttcctcaagcatagtgctaatatctacctacaattcacaaacaatgaaaaattgaaaatttgt |
238 |
Q |
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| T |
48150625 |
taatttgaagctgcaaaaacttcacatattggacagcttcctcaagcatagtgctaatatccacctacaattcacaaacaaaaaaagtttgagaatttga |
48150724 |
T |
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| Q |
239 |
acaccttaaccaattgtt-agtttaatttccat----taattaattaagaaatctaccttagttccatttgggacaagggtttgcaagattctcaatctt |
333 |
Q |
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| T |
48150725 |
ccatcttaaccaattattgagtaatagttcaatattgtttgtcattaagaaagctaccttagttccatttgggacaagagtttgcaagattctcaatctt |
48150824 |
T |
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| Q |
334 |
tcatttattctttctcttctc |
354 |
Q |
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| T |
48150825 |
tcatttattctttctcttctc |
48150845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 212
Target Start/End: Original strand, 48140885 - 48140964
Alignment:
| Q |
133 |
ttaccttaatttgaagctgcaaaaacttcacatattggacagcttcctcaagcatagtgctaatatctacctacaattca |
212 |
Q |
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| T |
48140885 |
ttaccttaatttggacctgtaaaaacttcacatattgcacagcttcctcaagcatggtgctgatatccacctataattca |
48140964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 353
Target Start/End: Original strand, 48141031 - 48141103
Alignment:
| Q |
281 |
agaaatctaccttagttccatttgggacaagggtttgcaagattctcaatctttcatttattctttctcttct |
353 |
Q |
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| T |
48141031 |
agaaagctaccttggttccattagggaccaggctttgtaggattttcaacctttcatttattctttctcttct |
48141103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 279349 - 279280
Alignment:
| Q |
135 |
accttaatttgaagctgcaaaaacttcacatattggacagcttcctcaagcatagtgctaatatctacct |
204 |
Q |
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| T |
279349 |
accttaatttgaagttgtaaaaatttcacatattggacagcttcctcaagcatggtgctgatatccacct |
279280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 288 - 353
Target Start/End: Complemental strand, 279203 - 279138
Alignment:
| Q |
288 |
taccttagttccatttgggacaagggtttgcaagattctcaatctttcatttattctttctcttct |
353 |
Q |
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||||||||||||||| ||||||||| |||| | |||| |||| ||||||||||||||||||||||| |
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| T |
279203 |
taccttagttccattggggacaaggttttgtaggattttcaacctttcatttattctttctcttct |
279138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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