View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4559_low_13 (Length: 337)
Name: NF4559_low_13
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 1325034 - 1325362
Alignment:
| Q |
1 |
agagacaaaatttttaacaaaaattgatttgtaaagtacattctaaatcctaaatttaatgttcacagtcatgcaattaaacatgtgagaggtaataaac |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1325034 |
agagacaaattttttaacaaaaattgatttgtaaagtacattctaaatcctaaatttaatgttcacagtcatgcaactaaacatgtgagaggtaataaac |
1325133 |
T |
|
| Q |
101 |
gattggaaactaaattaagcttttagaacatttatcggatcacaatccacgtttgtaacttatagcctctagtagaattttagagacctagttaatctct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1325134 |
gattggaaactaaattaagcttttagaacatttatcggatcacaatccacgtttgtaacttatagcctctagtagaattttagagacctagttaatctct |
1325233 |
T |
|
| Q |
201 |
aacaaacattactcatttctctctcttcttttttcatcattgcactctaattgcttccattgttctcaaccatcccatgaccacaccacaaaatttcatg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1325234 |
aacaaacattactcatttctctctcttcttttttcatcattgcactctaattgcttccattgttctcaaccatcccatgaccacaccacaaaatttcttg |
1325333 |
T |
|
| Q |
301 |
taaggtaaaattcttatgtgacctttgct |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1325334 |
taaggtaaaattcttatgtgacctttgct |
1325362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University