View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4559_low_14 (Length: 335)

Name: NF4559_low_14
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4559_low_14
NF4559_low_14
[»] chr2 (3 HSPs)
chr2 (1-328)||(44748239-44748569)
chr2 (75-215)||(35160613-35160752)
chr2 (200-327)||(23258401-23258529)
[»] chr6 (5 HSPs)
chr6 (76-145)||(15652745-15652813)
chr6 (76-145)||(15670577-15670645)
chr6 (78-145)||(15887813-15887878)
chr6 (76-127)||(15888252-15888302)
chr6 (78-131)||(4749184-4749236)
[»] chr3 (2 HSPs)
chr3 (76-145)||(36143818-36143886)
chr3 (78-130)||(10026838-10026889)
[»] scaffold0011 (1 HSPs)
scaffold0011 (80-145)||(19017-19082)
[»] chr4 (3 HSPs)
chr4 (208-327)||(14275794-14275914)
chr4 (78-145)||(13923714-13923780)
chr4 (78-145)||(13924134-13924200)
[»] chr8 (5 HSPs)
chr8 (78-145)||(4929775-4929841)
chr8 (76-145)||(21581249-21581317)
chr8 (78-145)||(4929336-4929402)
chr8 (208-302)||(16251708-16251803)
chr8 (23-60)||(45343688-45343725)
[»] chr7 (1 HSPs)
chr7 (76-141)||(18269144-18269206)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 44748569 - 44748239
Alignment:
Q  1 aaaaattctcttcttaaaaacttctagaatgtaggctaaataaattcttgctaacaaaaacttatttaggctacattttaaagttgattataactgtcaa 100  Q
    |||||||| |||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||    
T  44748569 aaaaattcacttcataaaaacttctagaatgtaggctacataagttcttgctaacaaaaacttatttaggctacattttaaagttaattataaccatcaa 44748470  T
Q  101 taaattttttacttgattagtcacaataaggacacaatgtttattnnnnnnnnnnn--ttaagaaattcattaccatttggttgccaaagttttcggtta 198  Q
    || | |||||||||||||| ||| |||||||||||||||||||||             |||||||||||||||||||||||||||||||||||| |||||    
T  44748469 tagaatttttacttgattaatcataataaggacacaatgtttattaaaaaaaaaaaaattaagaaattcattaccatttggttgccaaagtttttggtta 44748370  T
Q  199 gctcaccaaagtaatttcatatgtaaattttcgattgccactgtggtac-ttaaataatcctccaaattttagcttacaacattttggtgtataaatgaa 297  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44748369 gctcaccaaagtaatttcatatgtaaattttcgattgccactatggttcgttaaataatcctccaaattttagcatacaacattttggtgtataaatgaa 44748270  T
Q  298 ataaatcaataaatgcacctttcagtataat 328  Q
    ||||| ||||||||  |||||||| ||||||    
T  44748269 ataaaacaataaatatacctttcaatataat 44748239  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 35160613 - 35160752
Alignment:
Q  75 attttaaagttgattataactgtcaataaattttttacttgattagtcacaataaggacacaatgtttattnnnnnnnnnnnttaagaaattcattacca 174  Q
    ||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||| ||||||||||||           |||||||||||| |||||    
T  35160613 attttaaagttgattataactgtgaatagaatttttacttgattagtcacaataaggagacaatgtttatt-gaaaaaaaaattaagaaattcaatacca 35160711  T
Q  175 tttggttgccaaagttttcggttagctcaccaaagtaattt 215  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35160712 tttggttgccaaagttttcggttagctcaccaaagtaattt 35160752  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 327
Target Start/End: Complemental strand, 23258529 - 23258401
Alignment:
Q  200 ctcaccaaagtaatttcatatgtaaattttcgattgccactgtggtac-ttaaataatcctccaaattttagcttacaacattttggtgtataaatgaaa 298  Q
    |||| |||||| |||||||||||||||||||| |||| |   |||||| ||||||| ||||   |||||||||  | |||||||||||||  |  |||||    
T  23258529 ctcatcaaagttatttcatatgtaaattttcggttgcaatcctggtacattaaatattcctttgaattttagcacataacattttggtgtgcatgtgaaa 23258430  T
Q  299 taaatcaataaatgcacctttcagtataa 327  Q
     ||| || ||||||||||||||| |||||    
T  23258429 gaaaacattaaatgcacctttcaatataa 23258401  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 15652813 - 15652745
Alignment:
Q  76 ttttaaagttgattataactgtcaataaattttttacttgattagtcacaataaggacacaatgtttatt 145  Q
    |||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |||||||||||||    
T  15652813 ttttaaagttgattataattgtcaataaattttttaattga-tagtcacaataaggtcacaatgtttatt 15652745  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 15670645 - 15670577
Alignment:
Q  76 ttttaaagttgattataactgtcaataaattttttacttgattagtcacaataaggacacaatgtttatt 145  Q
    |||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |||||||||||||    
T  15670645 ttttaaagttgattataattgtcaataaattttttaattga-tagtcacaataaggtcacaatgtttatt 15670577  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 15887813 - 15887878
Alignment:
Q  78 ttaaagttgattataactgtcaataaattttttacttgattagtcacaataaggacacaatgtttatt 145  Q
    |||||||||||||||| |||||||||| |||||| |||| |||||||||||||| |||||||||||||    
T  15887813 ttaaagttgattataattgtcaataaa-tttttaattga-tagtcacaataaggtcacaatgtttatt 15887878  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 15888252 - 15888302
Alignment:
Q  76 ttttaaagttgattataactgtcaataaattttttacttgattagtcacaat 127  Q
    |||||||||||||||||| ||||||||||||||||| |||| ||||||||||    
T  15888252 ttttaaagttgattataattgtcaataaattttttaattga-tagtcacaat 15888302  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 4749236 - 4749184
Alignment:
Q  78 ttaaagttgattataactgtcaataaattttttacttgattagtcacaataagg 131  Q
    |||||||||||||||| | ||||||||||||||| ||||  |||||||||||||    
T  4749236 ttaaagttgattataattatcaataaattttttaattga-cagtcacaataagg 4749184  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 36143818 - 36143886
Alignment:
Q  76 ttttaaagttgattataactgtcaataaattttttacttgattagtcacaataaggacacaatgtttatt 145  Q
    |||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |||||||||||||    
T  36143818 ttttaaagttgattataattgtcaataaattttttaattga-tagtcacaataaggtcacaatgtttatt 36143886  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 10026838 - 10026889
Alignment:
Q  78 ttaaagttgattataactgtcaataaattttttacttgattagtcacaataag 130  Q
    |||||||||||||||| ||||||||||||||||| |||| |||||||||||||    
T  10026838 ttaaagttgattataattgtcaataaattttttaattga-tagtcacaataag 10026889  T

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Target: scaffold0011 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 19082 - 19017
Alignment:
Q  80 aaagttgattataactgtcaataaattttttacttgattagtcacaataaggacacaatgtttatt 145  Q
    |||||||||||||| |||||||| | ||||||||| |||||||||||||||||| |||||||||||    
T  19082 aaagttgattataattgtcaatagaatttttactttattagtcacaataaggacgcaatgtttatt 19017  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 327
Target Start/End: Complemental strand, 14275914 - 14275794
Alignment:
Q  208 agtaatttcatatgtaaattttcgattgccactgtggtactt-aaataatcctccaaattttagcttacaacattttggtgtataaatgaaataaatcaa 306  Q
    |||||||||||||||||||||||| ||| || | |||||| | ||||| |||||| |||||||||  | ||||||||| ||| || || ||||||| ||     
T  14275914 agtaatttcatatgtaaattttcggttgtcattctggtacatgaaatactcctccgaattttagcaaataacattttgatgtgtatataaaataaaacat 14275815  T
Q  307 taaatgcacctttcagtataa 327  Q
    ||||||||||||||| |||||    
T  14275814 taaatgcacctttcaatataa 14275794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 13923714 - 13923780
Alignment:
Q  78 ttaaagttgattataactgtcaataaattttttacttgattagtcacaataaggacacaatgtttatt 145  Q
    |||||||||||||||| ||||||||||||||||| |||| |||||||||||||| || ||||||||||    
T  13923714 ttaaagttgattataattgtcaataaattttttaattga-tagtcacaataaggtcataatgtttatt 13923780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 13924134 - 13924200
Alignment:
Q  78 ttaaagttgattataactgtcaataaattttttacttgattagtcacaataaggacacaatgtttatt 145  Q
    |||||||||||||||| | ||||||||||||||| |||| |||||||||||||| || ||||||||||    
T  13924134 ttaaagttgattataattatcaataaattttttaattga-tagtcacaataaggtcataatgtttatt 13924200  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 4929841 - 4929775
Alignment:
Q  78 ttaaagttgattataactgtcaataaattttttacttgattagtcacaataaggacacaatgtttatt 145  Q
    |||||||||||||||| ||||||||||||||||| |||| |||||||||||||| || ||||||||||    
T  4929841 ttaaagttgattataattgtcaataaattttttaattga-tagtcacaataaggtcataatgtttatt 4929775  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 145
Target Start/End: Complemental strand, 21581317 - 21581249
Alignment:
Q  76 ttttaaagttgattataactgtcaataaattttttacttgattagtcacaataaggacacaatgtttatt 145  Q
    |||||||||||||||||| ||||||||||||||||| |||| |||||||||| | | |||||||||||||    
T  21581317 ttttaaagttgattataattgtcaataaattttttaattga-tagtcacaattaagtcacaatgtttatt 21581249  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 4929402 - 4929336
Alignment:
Q  78 ttaaagttgattataactgtcaataaattttttacttgattagtcacaataaggacacaatgtttatt 145  Q
    |||||||||||||||| | ||||||| ||||||| |||| |||||||||||||| || ||||||||||    
T  4929402 ttaaagttgattataattatcaataatttttttaattga-tagtcacaataaggtcataatgtttatt 4929336  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 302
Target Start/End: Complemental strand, 16251803 - 16251708
Alignment:
Q  208 agtaatttcatatgtaaattttcgattgccactgtggtac-ttaaataatcctccaaattttagcttacaacattttggtgtataaatgaaataaa 302  Q
    |||||||||||||||||||||||| ||| || | | |||| ||||||| |||| | |||||||||  | ||||||||| ||| || ||||||||||    
T  16251803 agtaatttcatatgtaaattttcggttgacattctagtacattaaatattccttcgaattttagcaaataacattttgatgtgtatatgaaataaa 16251708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 45343725 - 45343688
Alignment:
Q  23 tctagaatgtaggctaaataaattcttgctaacaaaaa 60  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  45343725 tctagaatgtaggctaaataagttcttgttaacaaaaa 45343688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 18269206 - 18269144
Alignment:
Q  76 ttttaaagttgattataactgtcaataaattttttacttgattagtcacaataaggacacaatgtt 141  Q
    |||||||||||||||  | ||||||||||||||||| ||||| ||||||||||||| |||||||||    
T  18269206 ttttaaagttgatta--attgtcaataaattttttatttgat-agtcacaataaggtcacaatgtt 18269144  T

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