View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4559_low_15 (Length: 328)
Name: NF4559_low_15
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 44748658 - 44748741
Alignment:
| Q |
1 |
cactaggaaaatctaaatgaaatgtggtgtagtggaaacctgctaatagaatcacaatgttccctgaaagctgatttcacaaaa |
84 |
Q |
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| T |
44748658 |
cactaggaaaatctaaatgaaatgtggtgtagtggaaacctgctaatagaatcacaatgttccctgaaagctgatttcacaaaa |
44748741 |
T |
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Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 44749222 - 44749139
Alignment:
| Q |
1 |
cactaggaaaatctaaatgaaatgtggtgtagtggaaacctgctaatagaatcacaatgttccctgaaagctgatttcacaaaa |
84 |
Q |
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| T |
44749222 |
cactaggaaaatctaaaagaaatgtggtgtagtggaaacctgctaatagaatcacaatgttccctgaaagctgatttcacaaaa |
44749139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 12264753 - 12264708
Alignment:
| Q |
280 |
taatacattacacttccagaagcaaaatcaaaggataaacacaaag |
325 |
Q |
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| T |
12264753 |
taatacattacaattccagaatcaaactcaaaggataaacacaaag |
12264708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 326
Target Start/End: Original strand, 36511018 - 36511063
Alignment:
| Q |
281 |
aatacattacacttccagaagcaaaatcaaaggataaacacaaaga |
326 |
Q |
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| T |
36511018 |
aatacattacattttcagaagcaaaatcaaacgataaacaccaaga |
36511063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 314
Target Start/End: Original strand, 44951700 - 44951788
Alignment:
| Q |
226 |
aaaaaaccaacaagcttcatttgtaaaatttccaagtcaaactcaatcacaaagtaatacattacacttccagaagcaaaatcaaagga |
314 |
Q |
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| T |
44951700 |
aaaaaaacaacaagcttcctttgaaaaacttctagatcgaactcattcatcaaataacacgttacacttccagaagcaaaatcaaagga |
44951788 |
T |
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