View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4559_low_19 (Length: 286)
Name: NF4559_low_19
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 9300842 - 9301102
Alignment:
| Q |
18 |
ctcatttagaatttcttttacctcatgcaaaagtgcttatttatagttgactgaggagaggaattatgttatttttggttttctaacagatatcttgaac |
117 |
Q |
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| T |
9300842 |
ctcatttagaatttcttttacctcatgcaaaagtgcttatttatagttgactgaggagaggaattatgttatttttggttttctaacagatatcttgaac |
9300941 |
T |
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| Q |
118 |
agatcgtaggacatgtttagtttcaaattcttaattcagttgaatattatccataggcttagttctgatatcaattttgcaaaattttcttgttcctgta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9300942 |
agatcgtaggacatgtttagtttcaaattcttaattcagttgaatattatccataggcttagttctgatatcaattttgcaaaattttcttgttcctgta |
9301041 |
T |
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| Q |
218 |
ctcttaattcatattactcttccagtcttcctcataccactatagattgtttattcttctc |
278 |
Q |
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| T |
9301042 |
ctcttaattcatattactcttccagtcttcctcataccactatagattgtttattcttctc |
9301102 |
T |
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