View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4559_low_2 (Length: 610)

Name: NF4559_low_2
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4559_low_2
NF4559_low_2
[»] chr8 (11 HSPs)
chr8 (370-593)||(12195802-12196025)
chr8 (370-593)||(12440230-12440453)
chr8 (456-571)||(12200839-12200954)
chr8 (456-571)||(12445267-12445382)
chr8 (183-243)||(4961122-4961182)
chr8 (13-57)||(12196223-12196267)
chr8 (13-57)||(12440651-12440695)
chr8 (370-497)||(4961878-4962002)
chr8 (456-497)||(15349469-15349510)
chr8 (370-417)||(15349543-15349590)
chr8 (461-502)||(4030233-4030274)
[»] chr4 (19 HSPs)
chr4 (370-495)||(48871142-48871264)
chr4 (370-495)||(48876446-48876568)
chr4 (370-495)||(48886828-48886950)
chr4 (370-497)||(50669662-50669786)
chr4 (13-77)||(50249177-50249241)
chr4 (370-417)||(48864686-48864733)
chr4 (370-417)||(48899397-48899444)
chr4 (370-417)||(50673467-50673514)
chr4 (371-417)||(37826351-37826397)
chr4 (522-571)||(37826505-37826554)
chr4 (462-502)||(7237195-7237235)
chr4 (456-488)||(48734860-48734892)
chr4 (370-417)||(49038240-49038287)
chr4 (456-490)||(7905159-7905193)
chr4 (185-235)||(48853917-48853967)
chr4 (32-74)||(50664614-50664656)
chr4 (456-497)||(49043608-49043649)
chr4 (262-302)||(7801756-7801796)
chr4 (185-221)||(49042482-49042518)
[»] chr5 (2 HSPs)
chr5 (370-486)||(9120354-9120470)
chr5 (370-417)||(29696896-29696943)
[»] chr6 (2 HSPs)
chr6 (370-488)||(21979002-21979115)
chr6 (178-222)||(21978102-21978146)
[»] chr2 (1 HSPs)
chr2 (461-495)||(21426985-21427019)
[»] chr3 (1 HSPs)
chr3 (456-489)||(11023946-11023979)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 370 - 593
Target Start/End: Complemental strand, 12196025 - 12195802
Alignment:
Q  370 taaatatcaagaaaatggtgaaggagaatatttcaaaacctcattctttgtgattttttgccatcttgttaaatttgatcatggtccaccggggagtgaa 469  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  12196025 taaatatcaagaaaatgaagaaggagaatatttcaaaacctcattctttgtgattttttgccatcttgttaaatttcatcatggtccaccagggagtgaa 12195926  T
Q  470 agcagagactctgtatacatggccacttcagatgcaattgaattcattgcgaaatactctaacagctgtcccttattattatacttcaccaatccaagac 569  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12195925 agcagagactctgtatacatggccacttcagatgcaattgaattcattgcgaaatactctaacagctgtcccttattattatacttcaccaatccaagac 12195826  T
Q  570 caatattactagttccaataatat 593  Q
    ||||||||||||||||||||||||    
T  12195825 caatattactagttccaataatat 12195802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 370 - 593
Target Start/End: Complemental strand, 12440453 - 12440230
Alignment:
Q  370 taaatatcaagaaaatggtgaaggagaatatttcaaaacctcattctttgtgattttttgccatcttgttaaatttgatcatggtccaccggggagtgaa 469  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  12440453 taaatatcaagaaaatgaagaaggagaatatttcaaaacctcattctttgtgattttttgccatcttgttaaatttcatcatggtccaccagggagtgaa 12440354  T
Q  470 agcagagactctgtatacatggccacttcagatgcaattgaattcattgcgaaatactctaacagctgtcccttattattatacttcaccaatccaagac 569  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12440353 agcagagactctgtatacatggccacttcagatgcaattgaattcattgcgaaatactctaacagctgtcccttattattatacttcaccaatccaagac 12440254  T
Q  570 caatattactagttccaataatat 593  Q
    ||||||||||||||||||||||||    
T  12440253 caatattactagttccaataatat 12440230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 456 - 571
Target Start/End: Complemental strand, 12200954 - 12200839
Alignment:
Q  456 caccggggagtgaaagcagagactctgtatacatggccacttcagatgcaattgaattcattgcgaaatactctaacagctgtcccttattattatactt 555  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||  || |||||||||||||||||| ||||||||||||||    
T  12200954 caccagggagtgaaagcagagactctgtatacatcgccacttcagatgcatttggattcattttgagatactctaacagctgtcctttattattatactt 12200855  T
Q  556 caccaatccaagacca 571  Q
    |||||||||| |||||    
T  12200854 caccaatccatgacca 12200839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 456 - 571
Target Start/End: Complemental strand, 12445382 - 12445267
Alignment:
Q  456 caccggggagtgaaagcagagactctgtatacatggccacttcagatgcaattgaattcattgcgaaatactctaacagctgtcccttattattatactt 555  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||  || |||||||||||||||||| ||||||||||||||    
T  12445382 caccagggagtgaaagcagagactctgtatacatcgccacttcagatgcatttggattcattttgagatactctaacagctgtcctttattattatactt 12445283  T
Q  556 caccaatccaagacca 571  Q
    |||||||||| |||||    
T  12445282 caccaatccatgacca 12445267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 4961122 - 4961182
Alignment:
Q  183 tgtcatcaaactactgttttgccctgttttcattgtgcaagtcacagtttctataaacatg 243  Q
    ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||    
T  4961122 tgtcatcaaacaaccgttttgccttgttttcattgtgcaagtcacagtttctataaacatg 4961182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 12196267 - 12196223
Alignment:
Q  13 atcatcaagtagatcaaaatgtaaatgaaggaaccataaaaggtc 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12196267 atcatcaagtagatcaaaatgtaaatgaaggaaccataaaaggtc 12196223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 12440695 - 12440651
Alignment:
Q  13 atcatcaagtagatcaaaatgtaaatgaaggaaccataaaaggtc 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12440695 atcatcaagtagatcaaaatgtaaatgaaggaaccataaaaggtc 12440651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 370 - 497
Target Start/End: Original strand, 4961878 - 4962002
Alignment:
Q  370 taaatatcaagaaaatggtgaaggagaatatttcaaaacctcattctttgtgattttttgccatcttgttaaatttgatcatggtccaccggggagtgaa 469  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||  |   ||| || ||||||  |||| ||| ||  |||| ||  ||| |||||    
T  4961878 taaatatcaagaaaatggtgaatgagaatatttcaaaacctgattcttctt--atttatgtcatcttcataaacttgctcgaggtcaacatggg-gtgaa 4961974  T
Q  470 agcagagactctgtatacatggccactt 497  Q
    |||| |||||||||||||||||||||||    
T  4961975 agcaaagactctgtatacatggccactt 4962002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 456 - 497
Target Start/End: Complemental strand, 15349510 - 15349469
Alignment:
Q  456 caccggggagtgaaagcagagactctgtatacatggccactt 497  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  15349510 caccagggagtgaaagcagagactctgtatacatagccactt 15349469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 417
Target Start/End: Complemental strand, 15349590 - 15349543
Alignment:
Q  370 taaatatcaagaaaatggtgaaggagaatatttcaaaacctcattctt 417  Q
    |||||||||| |||||||||||||||||||  | ||||||||||||||    
T  15349590 taaatatcaataaaatggtgaaggagaataactgaaaacctcattctt 15349543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 461 - 502
Target Start/End: Original strand, 4030233 - 4030274
Alignment:
Q  461 gggagtgaaagcagagactctgtatacatggccacttcagat 502  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||    
T  4030233 gggagtgaaagcagagactctgtgtacatggtcacttgagat 4030274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 370 - 495
Target Start/End: Complemental strand, 48871264 - 48871142
Alignment:
Q  370 taaatatcaagaaaatggtgaaggagaatatttcaaaacctcattctttgtgattttttgccatcttgttaaatttgatcatggtccaccggggagtgaa 469  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||  ||  ||| || || ||| |||||  || |||| || |||| |||||||||    
T  48871264 taaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttg--tttgtgtcaccttcttaaacctgctcattgt-caccagggagtgaa 48871168  T
Q  470 agcagagactctgtatacatggccac 495  Q
    |||| |||||||||||| || |||||    
T  48871167 agcaaagactctgtatagatagccac 48871142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 370 - 495
Target Start/End: Complemental strand, 48876568 - 48876446
Alignment:
Q  370 taaatatcaagaaaatggtgaaggagaatatttcaaaacctcattctttgtgattttttgccatcttgttaaatttgatcatggtccaccggggagtgaa 469  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||  ||  ||| || || ||| |||||  || |||| || |||| |||||||||    
T  48876568 taaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttg--tttgtgtcaccttcttaaacctgctcattgt-caccagggagtgaa 48876472  T
Q  470 agcagagactctgtatacatggccac 495  Q
    |||| |||||||||||| || |||||    
T  48876471 agcaaagactctgtatagatagccac 48876446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 370 - 495
Target Start/End: Complemental strand, 48886950 - 48886828
Alignment:
Q  370 taaatatcaagaaaatggtgaaggagaatatttcaaaacctcattctttgtgattttttgccatcttgttaaatttgatcatggtccaccggggagtgaa 469  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||  ||  ||| || || ||| |||||  || |||| || |||| |||||||||    
T  48886950 taaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttg--tttgtgtcaccttcttaaacctgctcattgt-caccagggagtgaa 48886854  T
Q  470 agcagagactctgtatacatggccac 495  Q
    |||| |||||||||||| || |||||    
T  48886853 agcaaagactctgtatagatagccac 48886828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 497
Target Start/End: Complemental strand, 50669786 - 50669662
Alignment:
Q  370 taaatatcaagaaaatggtgaaggagaatatttcaaaacctcattctttgtgattttttgccatcttgttaaatttgatcatggtccaccggggagtgaa 469  Q
    ||||||| || ||||||||||||||||||||||||||||||  |||||  ||  ||| || |||||| || || ||| ||||||  || |||||||||||    
T  50669786 taaatataaataaaatggtgaaggagaatatttcaaaaccttgttcttcttg--tttgtgtcatctttttgaacttgttcatgg-acagcggggagtgaa 50669690  T
Q  470 agcagagactctgtatacatggccactt 497  Q
    || ||||||||||||||||| |||||||    
T  50669689 agtagagactctgtatacatagccactt 50669662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 50249177 - 50249241
Alignment:
Q  13 atcatcaagtagatcaaaatgtaaatgaaggaaccataaaaggtcaaacaaatagtgtctactat 77  Q
    |||| ||||||||||||| ||||||||||||||  ||||||| ||||||||||||||| ||||||    
T  50249177 atcaacaagtagatcaaattgtaaatgaaggaattataaaagatcaaacaaatagtgtgtactat 50249241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 417
Target Start/End: Complemental strand, 48864733 - 48864686
Alignment:
Q  370 taaatatcaagaaaatggtgaaggagaatatttcaaaacctcattctt 417  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||    
T  48864733 taaatatcaagaaaatagtgaaggagaatatttcacaacctcattctt 48864686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 417
Target Start/End: Complemental strand, 48899444 - 48899397
Alignment:
Q  370 taaatatcaagaaaatggtgaaggagaatatttcaaaacctcattctt 417  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||    
T  48899444 taaatatcaagaaaatggtaaaggagaatatttcaaaacctccttctt 48899397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 417
Target Start/End: Complemental strand, 50673514 - 50673467
Alignment:
Q  370 taaatatcaagaaaatggtgaaggagaatatttcaaaacctcattctt 417  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  50673514 taaatatcaagaaaatggtgaaggaaaatattttaaaacctcattctt 50673467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 37826351 - 37826397
Alignment:
Q  371 aaatatcaagaaaatggtgaaggagaatatttcaaaacctcattctt 417  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||    
T  37826351 aaatatcaagaaaatggtgaaggagaatattttgaaacctcattctt 37826397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 522 - 571
Target Start/End: Original strand, 37826505 - 37826554
Alignment:
Q  522 aatactctaacagctgtcccttattattatacttcaccaatccaagacca 571  Q
    |||||||||| || ||||| |||| |||||||||||||||||||||||||    
T  37826505 aatactctaagagttgtcctttatcattatacttcaccaatccaagacca 37826554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 462 - 502
Target Start/End: Original strand, 7237195 - 7237235
Alignment:
Q  462 ggagtgaaagcagagactctgtatacatggccacttcagat 502  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  7237195 ggagtgaaagcagagactctgtatacatgacaacttcagat 7237235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 456 - 488
Target Start/End: Original strand, 48734860 - 48734892
Alignment:
Q  456 caccggggagtgaaagcagagactctgtataca 488  Q
    |||||||||||||||||||||||||||||||||    
T  48734860 caccggggagtgaaagcagagactctgtataca 48734892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 417
Target Start/End: Original strand, 49038240 - 49038287
Alignment:
Q  370 taaatatcaagaaaatggtgaaggagaatatttcaaaacctcattctt 417  Q
    |||||||||||||||||||||||  |||||||||| |||||| |||||    
T  49038240 taaatatcaagaaaatggtgaagaggaatatttcataacctcgttctt 49038287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 490
Target Start/End: Complemental strand, 7905193 - 7905159
Alignment:
Q  456 caccggggagtgaaagcagagactctgtatacatg 490  Q
    ||||||||||||||||||||||||| |||||||||    
T  7905193 caccggggagtgaaagcagagactccgtatacatg 7905159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 48853967 - 48853917
Alignment:
Q  185 tcatcaaactactgttttgccctgttttcattgtgcaagtcacagtttcta 235  Q
    ||||||||||||| |||||||  |||||||||||| |||||| ||||||||    
T  48853967 tcatcaaactactattttgcctagttttcattgtgtaagtcagagtttcta 48853917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 50664656 - 50664614
Alignment:
Q  32 tgtaaatgaaggaaccataaaaggtcaaacaaatagtgtctac 74  Q
    ||||||||| |||| |||||||| |||||||||||||||||||    
T  50664656 tgtaaatgagggaatcataaaagatcaaacaaatagtgtctac 50664614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 497
Target Start/End: Original strand, 49043608 - 49043649
Alignment:
Q  456 caccggggagtgaaagcagagactctgtatacatggccactt 497  Q
    |||||||||||||||||| |||||||||||| || |||||||    
T  49043608 caccggggagtgaaagcaaagactctgtatagatagccactt 49043649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 7801796 - 7801756
Alignment:
Q  262 gtataagtttttatcctagctttaaaagaatgcttcctgta 302  Q
    ||||||| |||||| |||||||||||||||||| |||||||    
T  7801796 gtataagcttttattctagctttaaaagaatgcctcctgta 7801756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 49042482 - 49042518
Alignment:
Q  185 tcatcaaactactgttttgccctgttttcattgtgca 221  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  49042482 tcatcaaactactgttttgccttgtttccattgtgca 49042518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 370 - 486
Target Start/End: Complemental strand, 9120470 - 9120354
Alignment:
Q  370 taaatatcaagaaaatggtgaaggagaatatttcaaaacctcattctttgtgat-tttttgccatcttgttaaatttgatcatggtccaccggggagtga 468  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||  |  | ||| || |||||  ||||  ||| |||| || |||| ||||||||    
T  9120470 taaaaatcaagaaaatggtgaaggagaatatttcaaaacctcattcttcttcttgtttgtgtcatctccttaagcttgttcattgt-caccagggagtga 9120372  T
Q  469 aagcagagactctgtata 486  Q
    ||||||||||||||||||    
T  9120371 aagcagagactctgtata 9120354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 417
Target Start/End: Complemental strand, 29696943 - 29696896
Alignment:
Q  370 taaatatcaagaaaatggtgaaggagaatatttcaaaacctcattctt 417  Q
    |||| |||| ||||||||||||| |||||| |||||||||||||||||    
T  29696943 taaagatcatgaaaatggtgaagaagaatacttcaaaacctcattctt 29696896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 370 - 488
Target Start/End: Original strand, 21979002 - 21979115
Alignment:
Q  370 taaatatcaagaaaatggtgaagga-gaatatttcaaaacctcattctttgtgattttttgccatcttgttaaatttgatcatggtccaccggggagtga 468  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||    ||||| || ||||   ||||| || ||||| || |||||||||||||    
T  21979002 taaatattaagaaaatggtgaaggaagaatatttcaaaacctcattctt--ccattttatgtcatc---ttaaacttcatcattgt-caccggggagtga 21979095  T
Q  469 aagcagagactctgtataca 488  Q
    ||| ||||||||||||||||    
T  21979096 aagtagagactctgtataca 21979115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 21978102 - 21978146
Alignment:
Q  178 caatatgtcatcaaactactgttttgccctgttttcattgtgcaa 222  Q
    |||| ||||||||| ||||||||||||| ||||||||| ||||||    
T  21978102 caatctgtcatcaagctactgttttgccttgttttcatcgtgcaa 21978146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 495
Target Start/End: Complemental strand, 21427019 - 21426985
Alignment:
Q  461 gggagtgaaagcagagactctgtatacatggccac 495  Q
    ||||||||||||| |||||||||||||||||||||    
T  21427019 gggagtgaaagcatagactctgtatacatggccac 21426985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 489
Target Start/End: Original strand, 11023946 - 11023979
Alignment:
Q  456 caccggggagtgaaagcagagactctgtatacat 489  Q
    ||||||||||||||||||| ||||||||||||||    
T  11023946 caccggggagtgaaagcagggactctgtatacat 11023979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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