View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4559_low_26 (Length: 250)
Name: NF4559_low_26
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 44178433 - 44178217
Alignment:
| Q |
15 |
gagatgaagaaagataagagtgtcagttcgaaagctggagaggtcccggttagattaactcgtgcacgagctgctgctttaagtgcaactggacagttgc |
114 |
Q |
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| T |
44178433 |
gagatgaagaaagataagagtgtcagttcgaaagctggagaggtcccggttagattaactcgcgcacgagctgctgctttaagtgcaactggacagttgc |
44178334 |
T |
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| Q |
115 |
caccattgaaggatgtagcacaagaaagtcaaaagcatccgcaaggcgccaattcagaaagagcagtctctgatgatacatgccttccgcgtaagaagag |
214 |
Q |
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| T |
44178333 |
caccattgaaggatgtagcacaagaaagtcaaaagcatccgcaaggcgccaattcagaaagagcagtctctgatgatacatgccttccgcgtaagaagag |
44178234 |
T |
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| Q |
215 |
ggcagttcttgaggatg |
231 |
Q |
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| T |
44178233 |
ggcagctcttgaggatg |
44178217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 44171821 - 44171730
Alignment:
| Q |
44 |
gaaagctggagaggtcccggttagattaactcgtgcacgagctgctgctttaagtgcaactggacagttgccaccattgaaggatgtagcac |
135 |
Q |
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| T |
44171821 |
gaaagctggagaggttccaagtcgattgactcgtgctcgagctgtggctttgagtacaactggacagttaccaccaatgaaggaggtagcac |
44171730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 1538777 - 1538699
Alignment:
| Q |
41 |
ttcgaaagctggagaggtcccggttagattaactcgtgcacgagctgctgctttaagtgcaactggacagttgccacca |
119 |
Q |
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| T |
1538777 |
ttcgaaagttggagaggttctggtttgattaactcacacacgagctgctgctttaagtgaaactggacagtttccacca |
1538699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 17768824 - 17768746
Alignment:
| Q |
41 |
ttcgaaagctggagaggtcccggttagattaactcgtgcacgagctgctgctttaagtgcaactggacagttgccacca |
119 |
Q |
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|||||||| ||||||||| | |||| ||||||||| ||||||||||||||||||||| |||||||||||| |||||| |
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| T |
17768824 |
ttcgaaagttggagaggttctggtttgattaactcacacacgagctgctgctttaagtgaaactggacagtttccacca |
17768746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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