View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4559_low_27 (Length: 248)
Name: NF4559_low_27
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 799057 - 799286
Alignment:
| Q |
1 |
ttgtaacaacgaggacaaatgattcacctgaatttccatcatatcgattgttttttagatagaataataaaattcttcattcttaaattttggtgggcta |
100 |
Q |
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| T |
799057 |
ttgtaacaacgaggacaaatgattcacttgaatttccatcatatcgatttttttttagatagaataataaaattcttcattcttaaattttggtgggcta |
799156 |
T |
|
| Q |
101 |
tatcaatgaaatttcaaaatgatgagggaccgatttagaaagttatagaatttagggacgactttgcaattttttaaaacaattatagggaatgatttgc |
200 |
Q |
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| T |
799157 |
tatcaatgaaatttcaaaatgatgagggaccgatttagaaagttgtagaatttagggacgactttgcaattttttaaaacaattatagagaatgattcgc |
799256 |
T |
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| Q |
201 |
aaaatctcaaaaatattgagaccatttcgt |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
799257 |
aaaatctcaaaaatattgagaccatttcgt |
799286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 44568880 - 44568936
Alignment:
| Q |
63 |
aataataaaattcttcattcttaaattttggtgggctatatcaatgaaatttcaaaa |
119 |
Q |
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| T |
44568880 |
aataataataatcttcactcttaaattttgttgggctatttttatgaaatttcaaaa |
44568936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 47257087 - 47257049
Alignment:
| Q |
54 |
tttagatagaataataaaattcttcattcttaaattttg |
92 |
Q |
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| T |
47257087 |
tttagatagagtaataaaattcttcattcttaaactttg |
47257049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 87
Target Start/End: Original strand, 9978528 - 9978557
Alignment:
| Q |
58 |
gatagaataataaaattcttcattcttaaa |
87 |
Q |
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| T |
9978528 |
gatagaataataaaattcttcattcttaaa |
9978557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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