View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4559_low_3 (Length: 592)
Name: NF4559_low_3
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 525; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 29 - 573
Target Start/End: Complemental strand, 42187138 - 42186594
Alignment:
| Q |
29 |
gaataaactataatgataagcttcaagatcaataagatgttgttgggattctgaaatattttgaagtaaataaatttcttaccttagtcccgttcatttt |
128 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42187138 |
gaataaactataatgataagcttcaagatcaataagatgttgttgggattctgaaatattttgaagcaaataaatttcttaccttagtcccgttcatttt |
42187039 |
T |
|
| Q |
129 |
caattccgatgtgtccttaaaaacttgtttgattgcattaacctcagctaagtcaccggctagtgtggatgtggcatgagcattcacatagttcacctta |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42187038 |
caattccgatgtgtccttaaaaacttgtttgattgcattaacctcagctaagtcaccggctagtgtggatgtggcatgagcattcacatagttcaccttt |
42186939 |
T |
|
| Q |
229 |
acaatttagaaattaaccaattaggattcttacataaatatgagaatttgaacttgtttaagtgtaaacgtgtttgatatcaccatgagtttggcaaaat |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42186938 |
acaatttagaaattaaccaattaggattcttacataaatatgagaatttgaacttgtttaagtgtaaacgtgtttgatatcaccatgagtttggcaaaat |
42186839 |
T |
|
| Q |
329 |
ttcggtggctgtgtgattttttaaattatggcagcacagcatgattctgccgaactcaccaccaatccgaacatgcactaacatgaaatttttccagttt |
428 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42186838 |
ttcggtggctgtgtgattttttaaattgtggcagcacaccatgattctgccgaactcaccaccaatccgaacatgcactaacatgaaatttttccagttt |
42186739 |
T |
|
| Q |
429 |
tgatattattggttacttgtcactgctatctttcttacctcttcaggagataccccagcatcttctaaacccttgtttatgcaagatgatactcctagtc |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42186738 |
tgatattattggttacttgtcactgctatctttcttacctcttcaggagaaaccccagcatcttctaaacccttgtttatgcaagatgatactcctagtc |
42186639 |
T |
|
| Q |
529 |
catcagatctaggatcagtcatgtgatgagcatcacatgttatgg |
573 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42186638 |
catcagatctaggatcagtcatgtgatgagcatcacatgttatgg |
42186594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 29 - 257
Target Start/End: Complemental strand, 42204189 - 42203961
Alignment:
| Q |
29 |
gaataaactataatgataagcttcaagatcaataagatgttgttgggattctgaaatattttgaagtaaataaatttcttaccttagtcccgttcatttt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
42204189 |
gaataaactataatgataagcttcaagatcaataagatgttgttgggattctgaaatattttgaagcaaataaatttcttaccttagtcccgttcatttt |
42204090 |
T |
|
| Q |
129 |
caattccgatgtgtccttaaaaacttgtttgattgcattaacctcagctaagtcaccggctagtgtggatgtggcatgagcattcacatagttcacctta |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||||||| |
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|
| T |
42204089 |
caattccgatgtgtccttaaaaacttgtttgattgcattaacctcagctaagtcaccgatcagtgatgatgtggcgtgagcatttacatagttcaccttt |
42203990 |
T |
|
| Q |
229 |
acaatttagaaattaaccaattaggattc |
257 |
Q |
| |
|
||||||| ||| || |||||||||||| |
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|
| T |
42203989 |
acaatttgaaaagtagacaattaggattc |
42203961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 108 - 257
Target Start/End: Complemental strand, 42196853 - 42196704
Alignment:
| Q |
108 |
taccttagtcccgttcattttcaattccgatgtgtccttaaaaacttgtttgattgcattaacctcagctaagtcaccggctagtgtggatgtggcatga |
207 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| ||||| ||||| ||||||||||||| ||||||||| || ||||| |||| ||||||||||||||| |
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| T |
42196853 |
taccttagttccgttcattttcaattctgatgtatccttgaaaacctgtttgattgcataaacctcagccaaatcaccagctaccgtggatgtggcatga |
42196754 |
T |
|
| Q |
208 |
gcattcacatagttcaccttaacaatttagaaattaaccaattaggattc |
257 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
42196753 |
gcattcacatagttcacctttacaatttagaaattaaccaattaggattc |
42196704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 463 - 566
Target Start/End: Complemental strand, 42196470 - 42196367
Alignment:
| Q |
463 |
ttacctcttcaggagataccccagcatcttctaaacccttgtttatgcaagatgatactcctagtccatcagatctaggatcagtcatgtgatgagcatc |
562 |
Q |
| |
|
||||||||||||| || ||||| |||| |||||||| |||||||||||||||||| || || ||||||||||| || ||||||||||||||||||||||| |
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| T |
42196470 |
ttacctcttcaggggaaaccccggcattttctaaactcttgtttatgcaagatgaaacaccaagtccatcagaccttggatcagtcatgtgatgagcatc |
42196371 |
T |
|
| Q |
563 |
acat |
566 |
Q |
| |
|
|||| |
|
|
| T |
42196370 |
acat |
42196367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 461 - 573
Target Start/End: Complemental strand, 42203874 - 42203762
Alignment:
| Q |
461 |
tcttacctcttcaggagataccccagcatcttctaaacccttgtttatgcaagatgatactcctagtccatcagatctaggatcagtcatgtgatgagca |
560 |
Q |
| |
|
||||||||||| ||| || ||||||||||||| ||||| |||| |||||||||| || ||| |||||||||| | |||| |||||| ||||||||| |
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|
| T |
42203874 |
tcttacctcttgaggggaaaccccagcatcttgtaaactcttgcttatgcaagaggactgtccaagtccatcaggcattggattagtcatatgatgagca |
42203775 |
T |
|
| Q |
561 |
tcacatgttatgg |
573 |
Q |
| |
|
||||||||||||| |
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|
| T |
42203774 |
tcacatgttatgg |
42203762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 525 - 565
Target Start/End: Original strand, 46610573 - 46610613
Alignment:
| Q |
525 |
agtccatcagatctaggatcagtcatgtgatgagcatcaca |
565 |
Q |
| |
|
||||| |||||||| |||||||||||||||| ||||||||| |
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|
| T |
46610573 |
agtccgtcagatcttggatcagtcatgtgataagcatcaca |
46610613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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