View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4559_low_31 (Length: 238)

Name: NF4559_low_31
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4559_low_31
NF4559_low_31
[»] chr4 (3 HSPs)
chr4 (1-222)||(3251193-3251414)
chr4 (142-198)||(50668338-50668394)
chr4 (142-191)||(39489611-39489660)
[»] chr3 (4 HSPs)
chr3 (142-202)||(1743997-1744057)
chr3 (142-199)||(10926466-10926523)
chr3 (142-191)||(47377356-47377405)
chr3 (159-191)||(42943305-42943337)
[»] chr8 (9 HSPs)
chr8 (145-199)||(24202148-24202202)
chr8 (142-195)||(37141358-37141411)
chr8 (142-185)||(5179804-5179847)
chr8 (145-191)||(11104769-11104815)
chr8 (142-199)||(29924924-29924981)
chr8 (142-191)||(40795382-40795431)
chr8 (142-190)||(12800907-12800955)
chr8 (142-190)||(17806469-17806517)
chr8 (147-191)||(42982890-42982934)
[»] chr7 (1 HSPs)
chr7 (142-191)||(20103461-20103510)
[»] chr2 (2 HSPs)
chr2 (142-199)||(13196697-13196754)
chr2 (142-191)||(35727442-35727491)
[»] scaffold0027 (1 HSPs)
scaffold0027 (142-196)||(19197-19251)
[»] chr6 (2 HSPs)
chr6 (142-199)||(2726424-2726481)
chr6 (145-197)||(12276241-12276293)
[»] chr5 (2 HSPs)
chr5 (142-191)||(13864349-13864398)
chr5 (142-186)||(27903123-27903167)
[»] chr1 (9 HSPs)
chr1 (142-199)||(8269375-8269432)
chr1 (150-191)||(39949817-39949858)
chr1 (142-191)||(51067901-51067950)
chr1 (149-185)||(8148379-8148415)
chr1 (142-186)||(9413808-9413852)
chr1 (159-199)||(17339212-17339252)
chr1 (142-190)||(18398644-18398692)
chr1 (145-185)||(27023665-27023705)
chr1 (147-191)||(31998378-31998422)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3251193 - 3251414
Alignment:
Q  1 aatgttaaaatcaattttaaaaccaatagatacaaattctcactcgaagttaaaaccaattataaagacaaaattaattacaatcaagtaacgttgatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3251193 aatgttaaaatcaattttaaaaccaatagatacaaattctcactcgaagttaaaaccaattataaagacaaaattaattacaatcaagtaacgttgatta 3251292  T
Q  101 aaatcaattttatgtgtcagtaatcacttttttatcgtggtaaccccgaaccttgtaaatattatgtattgttcttaccaactgaattaagtttacgagt 200  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  3251293 aaatcaattttatgtgtcagtaatcacttttttatcgtcgtagccccgaaccttgcaaatattatgtattgttcttaccaactgaattaagtttacgagg 3251392  T
Q  201 acgttatctaatacttgttaat 222  Q
    ||||||||||||||||||||||    
T  3251393 acgttatctaatacttgttaat 3251414  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 50668394 - 50668338
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaattaagtttacga 198  Q
    |||||||||||||  | |||||||||||||||| |||||||||||||||||| ||||    
T  50668394 aaccccgaaccttacatatattatgtattgttcataccaactgaattaagttcacga 50668338  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 39489660 - 39489611
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaattaag 191  Q
    |||||||||||||| | ||| |||||||||||| || |||||||||||||    
T  39489660 aaccccgaaccttgcatatactatgtattgttcctatcaactgaattaag 39489611  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 1743997 - 1744057
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaattaagtttacgagtac 202  Q
    |||||||||||||| | |||||||||||||| | |||||||||||||||||| ||||||||    
T  1743997 aaccccgaaccttgcatatattatgtattgtccataccaactgaattaagttcacgagtac 1744057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 10926523 - 10926466
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaattaagtttacgag 199  Q
    |||||||||||||| | |||||||| ||||| ||||||||||||  |||| |||||||    
T  10926523 aaccccgaaccttgcatatattatgcattgtccttaccaactgagctaagcttacgag 10926466  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 47377356 - 47377405
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaattaag 191  Q
    |||| ||||||||||| |||||||| ||||| |||||||||||| |||||    
T  47377356 aacctcgaaccttgtatatattatgcattgtccttaccaactgagttaag 47377405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 42943337 - 42943305
Alignment:
Q  159 atattatgtattgttcttaccaactgaattaag 191  Q
    |||||||| ||||||||||||||||||||||||    
T  42943337 atattatgcattgttcttaccaactgaattaag 42943305  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 24202202 - 24202148
Alignment:
Q  145 cccgaaccttgtaaatattatgtattgttcttaccaactgaattaagtttacgag 199  Q
    |||||||||| || |||||||||||||||  ||||||||||||||||||||||||    
T  24202202 cccgaaccttatatatattatgtattgtttataccaactgaattaagtttacgag 24202148  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 37141411 - 37141358
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaattaagttta 195  Q
    |||||||||||||| | |||||||| ||||| | ||||||||||||||||||||    
T  37141411 aaccccgaaccttgcatatattatgcattgtccataccaactgaattaagttta 37141358  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 5179847 - 5179804
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactga 185  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||    
T  5179847 aaccccgaaccttgtatatattatgcattgtccttaccaactga 5179804  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Complemental strand, 11104815 - 11104769
Alignment:
Q  145 cccgaaccttgtaaatattatgtattgttcttaccaactgaattaag 191  Q
    ||||||||||||| |||||||| ||||||| |||||||||| |||||    
T  11104815 cccgaaccttgtatatattatgcattgttcctaccaactgagttaag 11104769  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 29924924 - 29924981
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaattaagtttacgag 199  Q
    |||||||||||||| | |||||||| |||||||||| ||||| | ||||||| |||||    
T  29924924 aaccccgaaccttgcatatattatgcattgttcttaacaactaagttaagttcacgag 29924981  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 40795431 - 40795382
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaattaag 191  Q
    ||||||| |||||| | |||||||||||||||| |||||||||| |||||    
T  40795431 aaccccggaccttgcatatattatgtattgttcataccaactgagttaag 40795382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 12800907 - 12800955
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaattaa 190  Q
    ||||||| |||||| | |||||||||||||| | |||||||||||||||    
T  12800907 aaccccggaccttgcatatattatgtattgtccataccaactgaattaa 12800955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 17806469 - 17806517
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaattaa 190  Q
    ||||||||| |||| |||||||||| ||| |||||||||||||| ||||    
T  17806469 aaccccgaaacttgcaaatattatgcattattcttaccaactgagttaa 17806517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 42982934 - 42982890
Alignment:
Q  147 cgaaccttgtaaatattatgtattgttcttaccaactgaattaag 191  Q
    ||||||||||| |||||||||||||| ||||||||| || |||||    
T  42982934 cgaaccttgtatatattatgtattgtccttaccaaccgagttaag 42982890  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 20103461 - 20103510
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaattaag 191  Q
    ||||||| ||||||||||||||||| ||||| |||||||||||| |||||    
T  20103461 aaccccggaccttgtaaatattatgcattgtccttaccaactgagttaag 20103510  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 13196754 - 13196697
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaattaagtttacgag 199  Q
    |||||||||||||| | |||||||| ||||||| |||||||||| ||||||| |||||    
T  13196754 aaccccgaaccttgcatatattatgcattgttcataccaactgagttaagttcacgag 13196697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 35727491 - 35727442
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaattaag 191  Q
    |||||| ||||||| | |||||||| |||||||||||||||||| |||||    
T  35727491 aaccccaaaccttgcatatattatgcattgttcttaccaactgagttaag 35727442  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 19251 - 19197
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaattaagtttac 196  Q
    |||||||| || |||| |||||||||||||||| |||||| ||||| ||||||||    
T  19251 aaccccgacccctgtatatattatgtattgttcctaccaattgaatcaagtttac 19197  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 2726424 - 2726481
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaattaagtttacgag 199  Q
    ||||||| |||||| | |||||||| ||||| | |||||||||| |||||||||||||    
T  2726424 aaccccggaccttgcatatattatgcattgtccataccaactgagttaagtttacgag 2726481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 12276241 - 12276293
Alignment:
Q  145 cccgaaccttgtaaatattatgtattgttcttaccaactgaattaagtttacg 197  Q
    ||||||| ||| | |||||||| ||||||||||||||||||  ||||||||||    
T  12276241 cccgaactttgcatatattatgcattgttcttaccaactgagctaagtttacg 12276293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 13864398 - 13864349
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaattaag 191  Q
    ||||||| |||||| | |||||||||||||||| |||||||||| |||||    
T  13864398 aaccccggaccttgcatatattatgtattgttcataccaactgagttaag 13864349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 27903167 - 27903123
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaa 186  Q
    |||||||||||||| | |||||||| ||||||| |||||||||||    
T  27903167 aaccccgaaccttgcatatattatgcattgttcataccaactgaa 27903123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 8269375 - 8269432
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaattaagtttacgag 199  Q
    ||||||| |||||| | |||||||||||||| ||||||||||||  |||||| |||||    
T  8269375 aaccccggaccttgcatatattatgtattgtccttaccaactgagctaagttcacgag 8269432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 39949858 - 39949817
Alignment:
Q  150 accttgtaaatattatgtattgttcttaccaactgaattaag 191  Q
    |||||||| |||||||| |||||||||||||||||| |||||    
T  39949858 accttgtatatattatgcattgttcttaccaactgagttaag 39949817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 51067901 - 51067950
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaattaag 191  Q
    |||||||| ||||| | |||||||||||| |||||||||||||| |||||    
T  51067901 aaccccgagccttgcatatattatgtattattcttaccaactgagttaag 51067950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 8148379 - 8148415
Alignment:
Q  149 aaccttgtaaatattatgtattgttcttaccaactga 185  Q
    ||||||| | |||||||||||||||||||||||||||    
T  8148379 aaccttgcatatattatgtattgttcttaccaactga 8148415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 9413852 - 9413808
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaa 186  Q
    |||||||||||||  | |||||||| |||||||||||||||||||    
T  9413852 aaccccgaaccttacatatattatgcattgttcttaccaactgaa 9413808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 17339252 - 17339212
Alignment:
Q  159 atattatgtattgttcttaccaactgaattaagtttacgag 199  Q
    |||||||||||||||| |||||||||| ||||| |||||||    
T  17339252 atattatgtattgttcataccaactgagttaagcttacgag 17339212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 18398692 - 18398644
Alignment:
Q  142 aaccccgaaccttgtaaatattatgtattgttcttaccaactgaattaa 190  Q
    ||||| |||| ||||  |||||||||||||| |||||||||||||||||    
T  18398692 aaccctgaactttgtctatattatgtattgtccttaccaactgaattaa 18398644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 27023665 - 27023705
Alignment:
Q  145 cccgaaccttgtaaatattatgtattgttcttaccaactga 185  Q
    ||||||||||| | |||||||| ||||||||||||||||||    
T  27023665 cccgaaccttgcatatattatgcattgttcttaccaactga 27023705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 31998422 - 31998378
Alignment:
Q  147 cgaaccttgtaaatattatgtattgttcttaccaactgaattaag 191  Q
    ||||||||| | ||||||| ||||||||||||||||||| |||||    
T  31998422 cgaaccttgcatatattatatattgttcttaccaactgatttaag 31998378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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