View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4559_low_32 (Length: 228)
Name: NF4559_low_32
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559_low_32 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42486614 - 42486393
Alignment:
| Q |
1 |
cttgaacatactaatttaatattatattaatacatacatactagccacatgacaagttatgaaaatgaccctgtatgtaatttccnnnnnnnnccatata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42486614 |
cttgaacatactaatttaatattatattaatacatacatactagccacatgacaagttatgaaaatgaccctgtatgtaatttccaaaaaaa-ccatata |
42486516 |
T |
|
| Q |
101 |
tagnnnnnnnaagcaagaaaaaagattagaatttctcccctcacagcacaggtgcctttcttcaagttgaaagagtgccaccaccaaccacatagtcaaa |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42486515 |
tagtttttttaagcaagaaaaaagattagaatttctcccctcacagcacaggtgcctttcttcaagttgaaagagtgccaccaccaaccacatagtcaaa |
42486416 |
T |
|
| Q |
201 |
gaaaaccaatccatattctccat |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
42486415 |
gaaaaccaatccatattctccat |
42486393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University