View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4559_low_33 (Length: 224)
Name: NF4559_low_33
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559_low_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 44646635 - 44646463
Alignment:
| Q |
1 |
attcgctatgctgctttcccaccatgcagtaactggacattttgaatgattctttaagctgcttagacattcctctcattatattcttgtgagttaacat |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44646635 |
attcgctatgctgctttcccatcatgcagtaactggacattttgaatgattctttaagctgcttagacattcctctcattatattcttgtgagttaacat |
44646536 |
T |
|
| Q |
101 |
ttttaggctacaatgtcataggtgagaaatatatcttcacaaattgctttagaacaaaacatgaaaaataata |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44646535 |
ttttaggctacaatgtcataggtgagaaatatatcttcacaaattgctttagaacaaaacatgaaaaataata |
44646463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 209
Target Start/End: Complemental strand, 44646403 - 44646375
Alignment:
| Q |
181 |
cgtgcactatagatgctctgaagctcatc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44646403 |
cgtgcactatagatgctctgaagctcatc |
44646375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University