View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4559_low_7 (Length: 464)
Name: NF4559_low_7
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559_low_7 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 12 - 447
Target Start/End: Complemental strand, 21273287 - 21272852
Alignment:
| Q |
12 |
agagacgagaatgggtctggaagaagaaatagaggaagagaaggaattcacacaagcagtcaagttcccgttgaattccaagtcaataactaccatatga |
111 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21273287 |
agagatgagaatgggtctggaagaagaaatagaggaagagaaggaattcacacaagcagtcaagttcccgttgaattccaagtcaataactaccatatga |
21273188 |
T |
|
| Q |
112 |
ggagaccaagtaactgcgtccaagttatccatttctgtccactctaaaaatattgtataactaagatatttacaaatcaacattgcaataggaaccgata |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
21273187 |
ggagaccaagtaactgcgtccaagttatccatttctgtccactctaaaaatattgtataacgaaggtatttacaaatcaacattgcaataggaaccgata |
21273088 |
T |
|
| Q |
212 |
aatatcttggctttccttccatgatagggaggaacaagaaggacatgtttaaattcattacggactgagtgtggaggaagattaactcgtggggaggacg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21273087 |
aatatcttggctttccttccatgatagggaggaacaagaaggacatgtttaaatacattaaggactgagtgtggaggaagattaactcgtggggaggacg |
21272988 |
T |
|
| Q |
312 |
ctatttatctaaggcgggaaaataattgatgagtaaatttgtgctccaatctattcctacctacttcatgagtatttttctaattccatcatctattgga |
411 |
Q |
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|| ||||||||||| ||||||| | ||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21272987 |
ctctttatctaaggtgggaaaaaagttgatgattaaatctgtgcttcaatctattcctacctacttcatgagtatttttctaattccatcatctattgga |
21272888 |
T |
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| Q |
412 |
gacgaaattgagaaaatcatgaattctttttggtgg |
447 |
Q |
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| T |
21272887 |
gacgaaattgagaaaatcatgaattctttttggtgg |
21272852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 181 - 447
Target Start/End: Complemental strand, 6752112 - 6751846
Alignment:
| Q |
181 |
ttacaaatcaacattgcaataggaaccgataaatatcttggctttccttccatgatagggaggaacaagaaggacatgtttaaattcattacggactgag |
280 |
Q |
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|||||| ||||||||||||| | || |||||||||||| ||| ||||||||||||||||||||| |||||| ||||||||||||||||||| |||| || |
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| T |
6752112 |
ttacaagtcaacattgcaattgaaatcgataaatatctcggccttccttccatgatagggaggagcaagaaagacatgtttaaattcattaaggaccaag |
6752013 |
T |
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| Q |
281 |
tgtggaggaagattaactcgtggggaggacgctatttatctaaggcgggaaaataattgatgagtaaatttgtgctccaatctattcctacctacttcat |
380 |
Q |
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| T |
6752012 |
tatggaggaagatcaattcatggggaggacgctctttatctaaggcgggaaaagaggtgatgattaaatctgcactccaatctattcctacctattttat |
6751913 |
T |
|
| Q |
381 |
gagtatttttctaattccatcatctattggagacgaaattgagaaaatcatgaattctttttggtgg |
447 |
Q |
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|||||||||||| ||||| |||||| |||| || ||||| || ||||| |||||||||||||||||| |
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| T |
6751912 |
gagtatttttctgattccctcatctcttggtgatgaaatcgaaaaaatgatgaattctttttggtgg |
6751846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 286 - 447
Target Start/End: Original strand, 6466519 - 6466680
Alignment:
| Q |
286 |
aggaagattaactcgtggggaggacgctatttatctaaggcgggaaaataattgatgagtaaatttgtgctccaatctattcctacctacttcatgagta |
385 |
Q |
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|||||||| || || ||||||||||||| ||||||||||||||||||| | |||||| ||||| | | |||||||||||||||||||| || || |||| |
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| T |
6466519 |
aggaagatcaattcatggggaggacgctctttatctaaggcgggaaaagaggtgatgattaaatatatactccaatctattcctacctattttataagta |
6466618 |
T |
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| Q |
386 |
tttttctaattccatcatctattggagacgaaattgagaaaatcatgaattctttttggtgg |
447 |
Q |
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| T |
6466619 |
tttttttgattccctcatctcttggtgatgaaatcgagaaaatcatgaattatttttggtgg |
6466680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 415 - 447
Target Start/End: Original strand, 13501829 - 13501861
Alignment:
| Q |
415 |
gaaattgagaaaatcatgaattctttttggtgg |
447 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
13501829 |
gaaattgagaaaatgatgaattctttttggtgg |
13501861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 181 - 447
Target Start/End: Complemental strand, 6956835 - 6956569
Alignment:
| Q |
181 |
ttacaaatcaacattgcaataggaaccgataaatatcttggctttccttccatgatagggaggaacaagaaggacatgtttaaattcattacggactgag |
280 |
Q |
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|||||| ||||||||||||| ||||||| ||||||||| | | |||||||||||| |||||||| |||||| ||| ||||||||||||||| ||| || |
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| T |
6956835 |
ttacaagtcaacattgcaattggaaccggtaaatatctcgaccttccttccatgacagggaggagcaagaaagacttgtttaaattcattaaggatcgaa |
6956736 |
T |
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| Q |
281 |
tgtggaggaagattaactcgtggggaggacgctatttatctaaggcgggaaaataattgatgagtaaatttgtgctccaatctattcctacctacttcat |
380 |
Q |
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| ||||||||||| || || |||||| |||||| |||||||| |||||||||| | |||||| ||||| ||| |||||||||||||||||||| ||||| |
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| T |
6956735 |
tatggaggaagatcaagtcatggggatgacgctctttatctacggcgggaaaagaggtgatgattaaatctgtactccaatctattcctacctatttcat |
6956636 |
T |
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| Q |
381 |
gagtatttttctaattccatcatctattggagacgaaattgagaaaatcatgaattctttttggtgg |
447 |
Q |
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| T |
6956635 |
gagtatttttctaattccctcatctcttggtgatgaaatcgagaaaatgatgaattctttttggtgg |
6956569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 278 - 445
Target Start/End: Complemental strand, 22010171 - 22010004
Alignment:
| Q |
278 |
gagtgtggaggaagattaactcgtggggaggacgctatttatctaaggcgggaaaataattgatgagtaaatttgtgctccaatctattcctacctactt |
377 |
Q |
| |
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|||| ||||||||||| ||||| ||||||| |||| ||||||||||||||||||| |||||| ||||| ||| ||||||||||||||||||||||| |
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| T |
22010171 |
gagtatggaggaagatcaactctaggggagggcgctctttatctaaggcgggaaaagtggtgatgattaaatctgtactccaatctattcctacctactt |
22010072 |
T |
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| Q |
378 |
catgagtatttttctaattccatcatctattggagacgaaattgagaaaatcatgaattctttttggt |
445 |
Q |
| |
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|| ||||||||||||||||| |||||| |||| || ||||| |||||||| ||||||||||| |||| |
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| T |
22010071 |
tataagtatttttctaattccctcatctcttggtgatgaaatcgagaaaatgatgaattctttatggt |
22010004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 22010234 - 22010176
Alignment:
| Q |
181 |
ttacaaatcaacattgcaataggaaccgataaatatcttggctttccttccatgatagg |
239 |
Q |
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|||||| ||||||||||||| |||||| |||||| |||||| |||||||| ||||||| |
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| T |
22010234 |
ttacaagtcaacattgcaatttgaaccggtaaataccttggccttccttccgtgatagg |
22010176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 415 - 447
Target Start/End: Original strand, 21503522 - 21503554
Alignment:
| Q |
415 |
gaaattgagaaaatcatgaattctttttggtgg |
447 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
21503522 |
gaaattgagaaaatgatgaattctttttggtgg |
21503554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 415 - 447
Target Start/End: Complemental strand, 204734 - 204702
Alignment:
| Q |
415 |
gaaattgagaaaatcatgaattctttttggtgg |
447 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |
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| T |
204734 |
gaaattgagaaaatgatgaattctttttggtgg |
204702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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