View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4559_low_9 (Length: 415)

Name: NF4559_low_9
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4559_low_9
NF4559_low_9
[»] chr1 (1 HSPs)
chr1 (46-407)||(798680-799041)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 46 - 407
Target Start/End: Original strand, 798680 - 799041
Alignment:
Q  46 gaatcctcatattgatgatnnnnnnnctcctgcttgaggagaaacatacctaaatggtgtgtatagtgcaagttagaatcttcatattgaatgaaaaagt 145  Q
    |||||||||||||||||||       || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  798680 gaatcctcatattgatgataaaaaaacttctgcttgaggagaaacatacctaaatggtgtgtatagtgcaagttagaatcttcatattgaatgaaaaagt 798779  T
Q  146 aatggggagcatgcgcagattgtgtgctgagtatgagttagaattttcacattgaatggttgatcttggctcgagatgatgatgcatcggactctcctca 245  Q
    ||||||||||||||| |||||||||||| |||||||||||||| |||| ||||||||  ||||||||||||||||||||||||||||||| |||||||||    
T  798780 aatggggagcatgcgtagattgtgtgctaagtatgagttagaaatttcgcattgaattattgatcttggctcgagatgatgatgcatcgggctctcctca 798879  T
Q  246 tgacccaacattcctacagagtgtatttggatgtgtaaattatcattttaagcaattcaaactttcaattttttaataaattagatgcctaatggacaca 345  Q
    |||||||||||||||  |||||||||||||||| ||||||||| |||||| | |||||||| |||| ||||||||||| || ||  ||||||||| ||||    
T  798880 tgacccaacattcctcaagagtgtatttggatgggtaaattataattttaggaaattcaaattttccattttttaatagatgagtggcctaatggccaca 798979  T
Q  346 cacggcaaaatgaaggttgtaaacacaagatcaaaaacgtgcaccaaaatgaaatgacctca 407  Q
    |||||||||||||||| || |||| | |||||||| ||||||||| | |||||||| |||||    
T  798980 cacggcaaaatgaagggtggaaacccgagatcaaacacgtgcacccacatgaaatgtcctca 799041  T

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