View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4560-Insertion-1 (Length: 810)
Name: NF4560-Insertion-1
Description: NF4560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4560-Insertion-1 |
 | |
|
| [»] chr4 (28 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 690; Significance: 0; HSPs: 28)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 7 - 810
Target Start/End: Complemental strand, 253922 - 253116
Alignment:
| Q |
7 |
aataacaaccaagtgaaaattgaatacactattttggtaatatagcacactcattagttactagtgccactaccaccataaaattgtgaatttttgtcct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
253922 |
aataacaaccaagtgaaaattgaatacactattttggtaatatagcacactcattagttactagtgccactaccaccataaaattgtgaatttttgtcct |
253823 |
T |
|
| Q |
107 |
ctatggaaccttgaaatttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaaca |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
253822 |
ctatggaaccttgaaatttttgtctaggagttgccgataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaaca |
253723 |
T |
|
| Q |
207 |
aatccaagttccatacttaaaaaattccaatcaattgaacaag----atagccctctacatgctggttgtgaatgcaatctctgctctttatcatctgac |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
253722 |
aatccaagttccatacttaaaaaattccaatcaattgaacaagatatatagccctctacatgctggttgtgaatgcaatctctgctctttatcatctgac |
253623 |
T |
|
| Q |
303 |
tttttgctcaatggaggcccatataatcctagtttccttcaaaggaagaagcttgaaatgactgaagttgagtacctgtggaaatctcccccaccaaatg |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
253622 |
tttttgctcaatggaggcccatataatcctagtttccttcaagggaagaagcttgaaatg-ctgaagttgagtacctgtgggaatctcccccaccaaatg |
253524 |
T |
|
| Q |
403 |
attgaaggagaggttctaataaataagaaagaagggacaagcttccaagattcacaggaattttgctaactaaaaagttatttgagaggcctaaggactc |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
253523 |
attgaaggagaggttctaataaataagaaagaagggacaagcttccaagtttcacaggaattttgctaactaaagagttatttgagaggtctaaggactc |
253424 |
T |
|
| Q |
503 |
--attgtttcaagttccctatagaagacgggatttcgcctgagaccattgttagaaaagttgagagcataaagttctttgaagttcattagcatctctgg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
253423 |
taattgtttcaagttccctatagaagacgggatttcgcctgagaccattgtttgaaaagttgagagcataaagttctttgaagtccattagcatctctgg |
253324 |
T |
|
| Q |
601 |
tatcggtccatctgttgacctttattggaaactgtcatgctatcctgataatatacagaatcctccgtgtagataaattttggtatagcgtgatcttcgt |
700 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
253323 |
tatcggtccacctgttgacctttattggaaactgtcacgctatcctgataatatacagaatcctccgtgtagataaattttggtatagcgtgatcttcgt |
253224 |
T |
|
| Q |
701 |
catcgtgcatcannnnnnnnncccaagttctgaaaaacaatttcaaataggcagcatgtttagaaaatacaggtatttgaccctaccaattggctgtcat |
800 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
253223 |
catcgtgcatca-ttttttttcccaagttctgaaaaacaatttcaaataggcagcatgtttagaaaatacaggta-ttgaccctaccaattggctgtcat |
253126 |
T |
|
| Q |
801 |
gcatatcaag |
810 |
Q |
| |
|
||| |||||| |
|
|
| T |
253125 |
gcagatcaag |
253116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 124 - 588
Target Start/End: Original strand, 5856260 - 5856731
Alignment:
| Q |
124 |
ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact |
223 |
Q |
| |
|
||||||| | ||||| |||||||| ||| |||||||| ||| |||| || | || |||||| | | ||||||||||||||| |||||| ||||||| ||| |
|
|
| T |
5856260 |
ttttgtccatgagtttccaataacctaccctccattgcttccaaaacatgatgggaccaataacacttccaagcccaaaaataaatcctagttccacact |
5856359 |
T |
|
| Q |
224 |
taaaaaattccaatcaattgaacaagatagc------cctctacatgctggttgtgaatgcaatctctgctctttatcatctgactttttgctcaatgga |
317 |
Q |
| |
|
||||||||||||||||||| ||||||||| | | |||||||||||| |||| ||||||| ||||| |||||||| || ||| | |||| || |
|
|
| T |
5856360 |
taaaaaattccaatcaattaaacaagataactttctacttctacatgctggctgtggatgcaattcctgctttttatcatatgcttttctagtcaacaga |
5856459 |
T |
|
| Q |
318 |
ggcccatataatcc-tagtttccttcaaaggaagaagcttgaaatgactgaagttgagtacctgtggaaatctcccccaccaaatgattgaaggagaggt |
416 |
Q |
| |
|
|| ||||||||||| | |||||||| |||||||||| | | |||||||||||||||||| ||||| | ||||| |||| | ||||||||||| ||||||| |
|
|
| T |
5856460 |
ggtccatataatccgtcgtttcctttaaaggaagaatcgtcaaatgactgaagttgagtgcctgttggaatcttccccgcgaaatgattgaatgagaggt |
5856559 |
T |
|
| Q |
417 |
tctaataaataagaaagaagggacaagcttccaagattcacaggaattttgctaactaaaaagttatttgagaggcctaaggactc--attgtttcaagt |
514 |
Q |
| |
|
|| || |||||||| | |||| ||| |||| | || ||||||| | || ||| |||||||||||||| |||| ||||| | |||||||||| |
|
|
| T |
5856560 |
tc----aagtaagaaaggaatgacagacttgcaagttgcatgggaatttcaccaatcaaagagttatttgagaggtctaatgactccaactgtttcaagt |
5856655 |
T |
|
| Q |
515 |
tccctatagaagacgggatttcgcct--gagaccattgttagaaaagttgagagcataaagttctttgaagttcat |
588 |
Q |
| |
|
| || |||||||| |||||||| ||| ||||| |||||| |||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
5856656 |
ttccaatagaagatgggatttcacctgagagacaattgtttgaaaagttgagaacatgaagtgctttgaagttcat |
5856731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 335 - 586
Target Start/End: Complemental strand, 5573003 - 5572752
Alignment:
| Q |
335 |
tttccttcaaaggaagaagcttgaaatgactgaagttgagtacctgtggaaatctcccccaccaaatgattgaaggagaggttctaataaataagaaaga |
434 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||| | |||| ||||||||||||||||||||| |||||| ||||| ||||| |
|
|
| T |
5573003 |
tttccttcaaaagaagaagactgaaatgactgaagttgagtacctgttgggatcttccccaccaaatgattgaaggaaaggttc----aaatatgaaagg |
5572908 |
T |
|
| Q |
435 |
agggacaagcttccaagattcacaggaattttgctaactaaaaagttatttgagaggcctaaggactc--attgtttcaagttccctatagaagacggga |
532 |
Q |
| |
|
| |||||||||| | || | ||||||||||| | | ||| ||||||||||||| |||||||||| ||||||||||||||||||| ||||| |||| |
|
|
| T |
5572907 |
aaggacaagctttctagctgcacaggaatttcaccagtcaaagtgttatttgagaggtctaaggactccaattgtttcaagttccctatggaagatggga |
5572808 |
T |
|
| Q |
533 |
tttcgcct--gagaccattgttagaaaagttgagagcataaagttctttgaagttc |
586 |
Q |
| |
|
||| ||| ||||| ||||| |||| ||||||| |||||| ||||||||||| |
|
|
| T |
5572807 |
ttttacctgagagacggttgtttgaaatgttgagaatgtaaagtgctttgaagttc |
5572752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 335 - 586
Target Start/End: Complemental strand, 5585210 - 5584959
Alignment:
| Q |
335 |
tttccttcaaaggaagaagcttgaaatgactgaagttgagtacctgtggaaatctcccccaccaaatgattgaaggagaggttctaataaataagaaaga |
434 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||| | |||| ||||||||||||||||||||| |||||| ||||| ||||| |
|
|
| T |
5585210 |
tttccttcaaaagaagaagactgaaatgactgaagttgagtacctgttgggatcttccccaccaaatgattgaaggaaaggttc----aaatatgaaagg |
5585115 |
T |
|
| Q |
435 |
agggacaagcttccaagattcacaggaattttgctaactaaaaagttatttgagaggcctaaggactc--attgtttcaagttccctatagaagacggga |
532 |
Q |
| |
|
| |||||||||| | || | ||||||||||| | | ||| ||||||||||||| |||||||||| ||||||||||||||||||| ||||| |||| |
|
|
| T |
5585114 |
aaggacaagctttctagctgcacaggaatttcaccagtcaaagtgttatttgagaggtctaaggactccaattgtttcaagttccctatggaagatggga |
5585015 |
T |
|
| Q |
533 |
tttcgcct--gagaccattgttagaaaagttgagagcataaagttctttgaagttc |
586 |
Q |
| |
|
||| ||| ||||| ||||| |||| ||||||| |||||| ||||||||||| |
|
|
| T |
5585014 |
ttttacctgagagacggttgtttgaaatgttgagaatgtaaagtgctttgaagttc |
5584959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 198 - 609
Target Start/End: Original strand, 5557204 - 5557616
Alignment:
| Q |
198 |
ccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaagatagccctctacatgctggttgtgaatgcaatctctgctctttatcat |
297 |
Q |
| |
|
||||| |||||||| ||||| | ||||| ||||||||| ||||||||||||| |||| || |||||||||||||| |||||| ||| |||| ||| |
|
|
| T |
5557204 |
ccaaacacaaatcccagttctacacttataaaattccagtcaattgaacaagtaagccttccacatgctggttgtggatgcaagtcatgccttttaccat |
5557303 |
T |
|
| Q |
298 |
ctgactttttgc-tcaatggaggcccatataatcc-tagtttccttcaaaggaagaagcttgaaatgactgaagttgagtacctgtggaaatctccccca |
395 |
Q |
| |
|
|| | | || | |||||||||| ||||||| ||| | || |||||||| ||||| |||| ||||||||||||||| |||||||| | ||| ||| | |
|
|
| T |
5557304 |
ct-agtcttaccgtcaatggaggaccatatagtccatcattaccttcaaatgaagatgcttcaaatgactgaagttgggtacctgttgggatcatcccaa |
5557402 |
T |
|
| Q |
396 |
ccaaatgattgaaggagaggttctaataaataagaaagaagggacaagcttccaagattcacaggaattttgctaactaaaaagttatttgagaggccta |
495 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||| | |||| |||| |||| | ||| ||||||| | ||| || |||||||||||||| | | |
|
|
| T |
5557403 |
ctaaatgattgaaggagaggttc----aaataagaaaggaatgacatgcttgcaagttgcactggaatttcaccaaccaatgagttatttgagaggtcca |
5557498 |
T |
|
| Q |
496 |
aggactc--attgtttcaagttccctatagaagacgggatttcgcctgagac--cattgttagaaaagttgagagcataaagttctttgaagttcattag |
591 |
Q |
| |
|
||||||| | ||||||| |||||| |||| || |||||||| || |||| ||||||| |||||||||||| ||| | | ||||||||| |||||| |
|
|
| T |
5557499 |
aggactccaactgtttcaggttcccaatagttgatgggatttcaccagagagagcattgtttgaaaagttgagaacatggattgctttgaagtccattag |
5557598 |
T |
|
| Q |
592 |
catctctggtatcggtcc |
609 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
5557599 |
cacatctggtattggtcc |
5557616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 186 - 523
Target Start/End: Original strand, 3747174 - 3747510
Alignment:
| Q |
186 |
aaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaagatagccctctacatgctggttgtgaatgcaatctct |
285 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||||| |||||||| |||||| ||| |||| || ||||| || ||||| | ||||| |||||| || |
|
|
| T |
3747174 |
aaaatcccaagcccgaaaacaaatccaaattccacacttaaaatattccagtcacttgacttagctagccttccacatgtttcttgtggatgcaagtcct |
3747273 |
T |
|
| Q |
286 |
gctctttatcatctgactttttgctcaatggaggcccatataatcc-tagtttccttcaaaggaagaagcttgaaatgactgaagttgagtacctgtgga |
384 |
Q |
| |
|
|| | || |||||| |||| |||| ||||| ||||||| || || |||||||| || ||||| |||| ||||||||||||||| |||||||| | |
|
|
| T |
3747274 |
gccttataccatctggtttttcagtcaacggaggaccatatagaccataatttccttcgaacgaagatgcttcaaatgactgaagttgcgtacctgttgg |
3747373 |
T |
|
| Q |
385 |
aatctcccccaccaaatgattgaaggagaggttctaataaataagaaagaagggacaagcttccaagattcacaggaattttgctaactaaaaagttatt |
484 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||| ||||| ||||| | ||||||||| |||| | || ||||||| | ||| || ||||||| |
|
|
| T |
3747374 |
aatcttcccaaccaaatgattgaaggagaggttc----aaatatgaaaggaaggacaagctggcaagttgcatgggaatttcaccaaccaatgagttatt |
3747469 |
T |
|
| Q |
485 |
tgagaggcctaaggactc--attgtttcaagttccctatag |
523 |
Q |
| |
|
||||||| | |||||||| | ||||||||||| ||||||| |
|
|
| T |
3747470 |
tgagaggtccaaggactctaactgtttcaagtttcctatag |
3747510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 334 - 565
Target Start/End: Original strand, 5551576 - 5551807
Alignment:
| Q |
334 |
gtttccttcaaaggaagaagcttgaaatgactgaagttgagtacctgtggaaatctcccccaccaaatgattgaaggagaggttctaataaataagaaag |
433 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||| | |||| || ||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
5551576 |
gtttccttcaaatgaagacgcttgaaatgactgaagttgagtacctgtagggatctttccaaccaaatgattgaaggaaaggttc----aaataagaaag |
5551671 |
T |
|
| Q |
434 |
aagggacaagcttccaagattcacaggaattttgctaactaaaaagttatttgagaggcctaaggactc--attgtttcaagttccctatagaagacggg |
531 |
Q |
| |
|
| || |||||| |||| | |||||| ||| | ||| || |||||||||||||| |||| ||||| | ||||||| |||||| |||| || ||| |
|
|
| T |
5551672 |
gaatgataagcttgcaagttgcacaggtattacaccaaccaaggagttatttgagaggtctaatgactctaactgtttcaggttcccaatagttgatggg |
5551771 |
T |
|
| Q |
532 |
atttcgcctgag--accattgttagaaaagttgaga |
565 |
Q |
| |
|
||||| || ||| ||||||||| |||||||||||| |
|
|
| T |
5551772 |
atttcaccggagataccattgttcgaaaagttgaga |
5551807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 124 - 249
Target Start/End: Original strand, 5562915 - 5563040
Alignment:
| Q |
124 |
ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact |
223 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||||||| ||| |||| | |||| ||||| || ||||| ||||||||||||||||| | ||||| ||| |
|
|
| T |
5562915 |
ttttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggaccaacgatgattccgagcccaaaaacaaatcccaattccacact |
5563014 |
T |
|
| Q |
224 |
taaaaaattccaatcaattgaacaag |
249 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
5563015 |
taaaaaattccagtcaattgaacaag |
5563040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 335 - 593
Target Start/End: Original strand, 5563127 - 5563385
Alignment:
| Q |
335 |
tttccttcaaaggaagaagcttgaaatgactgaagttgagtacctgtggaaatctcccccaccaaatgattgaaggagaggttctaataaataagaaaga |
434 |
Q |
| |
|
||||||||||||||||| |||| |||||| |||||||| |||||||| | |||| ||||||||||||||||| ||| |||||| || ||||||| |
|
|
| T |
5563127 |
tttccttcaaaggaagatgcttcaaatgattgaagttgggtacctgttgggatcttccccaccaaatgattgatggaaaggttc----aagaaagaaagg |
5563222 |
T |
|
| Q |
435 |
agggacaagcttccaagattcacaggaattttgctaactaaaaagttatttgagaggcctaaggactc--attgtttcaagttccctatagaagacggga |
532 |
Q |
| |
|
| |||| |||| ||| | ||||||||| || | ||| | | |||||||||||||| | |||||||| | ||||||| |||||| |||| || || | |
|
|
| T |
5563223 |
aatgacaggcttgcaatctgcacaggaatcttaccaaccagagagttatttgagaggtccaaggactccaactgtttcaggttcccgatagttgatggaa |
5563322 |
T |
|
| Q |
533 |
tttcgcc--tgagaccattgttagaaaagttgagagcataaagttctttgaagttcattagca |
593 |
Q |
| |
|
|||| || |||| ||||||| |||||||||||| |||||||| ||||||||| ||| |||| |
|
|
| T |
5563323 |
tttcaccagagagagcattgtttgaaaagttgagaacataaagtgctttgaagtccatcagca |
5563385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 182 - 590
Target Start/End: Original strand, 5603671 - 5604080
Alignment:
| Q |
182 |
aatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaagatagccctctacatgctggttgtgaatgcaat |
281 |
Q |
| |
|
||||| ||||||||||||||||| ||||| | ||||| ||||| ||||||||| ||||||||||||| ||||| ||||||||| | |||| |||| || |
|
|
| T |
5603671 |
aatgacaattccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaattgaacaagctagccttctacatgcaagctgtggatgc-at |
5603769 |
T |
|
| Q |
282 |
ct-ctgctctttatcatctgactttttgctcaatggaggcccatataatcc-tagtttccttcaaaggaagaagcttgaaatgactgaagttgagtacct |
379 |
Q |
| |
|
|| |||| |||||||| || ||||| || | ||||| ||||||| || | |||||||||||| || || ||| |||||||||| ||| || ||| |
|
|
| T |
5603770 |
ctcctgccttttatcatttggttttttagtccaaggaggaccatatagcccatcgtttccttcaaatgatgattcttcgaatgactgaatttgggtgcct |
5603869 |
T |
|
| Q |
380 |
gtggaaatctcccccaccaaatgattgaaggagaggttctaataaataagaaagaagggacaagcttccaagattcacaggaattttgctaactaaaaag |
479 |
Q |
| |
|
|| || |||| | || ||||| ||||| ||||||||||| || ||||||| | |||| |||| ||| | |||||||||| | ||| | |||| |
|
|
| T |
5603870 |
gttgagatcttcaccgccaaacgattggaggagaggttc----aaggaagaaaggaatgacaggcttgcaatctgcacaggaattccaccaaccagaaag |
5603965 |
T |
|
| Q |
480 |
ttatttgagaggcctaaggactc--attgtttcaagttccctatagaagacgggatttcgcc--tgagaccattgttagaaaagttgagagcataaagtt |
575 |
Q |
| |
|
|||||||||||| | || ||||| | ||||||| |||||| | || || |||||||| || |||||||||||| |||||||||||| |||||||| |
|
|
| T |
5603966 |
ttatttgagaggtccaaagactccaactgtttcaggttcccaacagttgatgggatttcaccatagagaccattgtttgaaaagttgagaacataaagtg |
5604065 |
T |
|
| Q |
576 |
ctttgaagttcatta |
590 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
5604066 |
ctttgaagtccatta |
5604080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 124 - 249
Target Start/End: Complemental strand, 5888271 - 5888146
Alignment:
| Q |
124 |
ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact |
223 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||||||| ||| |||| | |||| ||||| || |||||||| ||||||| |||||| | ||||| ||| |
|
|
| T |
5888271 |
ttttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggaccaacgatgattccaagtccaaaaataaatcccaattccacact |
5888172 |
T |
|
| Q |
224 |
taaaaaattccaatcaattgaacaag |
249 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
5888171 |
taaaaaattccattcaattgaacaag |
5888146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 124 - 250
Target Start/End: Original strand, 5611731 - 5611857
Alignment:
| Q |
124 |
ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact |
223 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||||||| ||| |||| | ||| | ||| |||| ||||| ||||||||||||||||| | |||| ||| |
|
|
| T |
5611731 |
ttttgtctacgagtttccaataacttactctccatttcttccaaaacaaaagaggaccgatgatgattccgagcccaaaaacaaatcccaactccacact |
5611830 |
T |
|
| Q |
224 |
taaaaaattccaatcaattgaacaaga |
250 |
Q |
| |
|
|||||||||||| ||||||||| |||| |
|
|
| T |
5611831 |
taaaaaattccagtcaattgaagaaga |
5611857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 338 - 424
Target Start/End: Original strand, 5611946 - 5612032
Alignment:
| Q |
338 |
ccttcaaaggaagaagcttgaaatgactgaagttgagtacctgtggaaatctcccccaccaaatgattgaaggagaggttctaataa |
424 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||| | |||| ||| ||||||||||||||||| || ||| ||||| |
|
|
| T |
5611946 |
ccttcaaatgaagaagcctgaaatgactgaagttgagtacctgttgggatcttcccaaccaaatgattgaaggaaagtttcaaataa |
5612032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 347 - 502
Target Start/End: Complemental strand, 5896907 - 5896756
Alignment:
| Q |
347 |
gaagaagcttgaaatgactgaagttgagtacctgtggaaatctcccccaccaaatgattgaaggagaggttctaataaataagaaagaagggacaagctt |
446 |
Q |
| |
|
||||| |||| ||||||||||||||| |||||||| | ||||| ||||||||||||||||| ||| |||||| ||||||||||| | ||||| ||| |
|
|
| T |
5896907 |
gaagatgcttcaaatgactgaagttgggtacctgttggaatcttccccaccaaatgattgagggataggttc----aaataagaaaggaatgacaaactt |
5896812 |
T |
|
| Q |
447 |
ccaagattcacaggaattttgctaactaaaaagttatttgagaggcctaaggactc |
502 |
Q |
| |
|
|||| | ||| ||||||| | ||| ||| |||||||||||||| | |||||||| |
|
|
| T |
5896811 |
gcaagttgcaccggaatttcaccaaccaaagagttatttgagaggtccaaggactc |
5896756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 124 - 249
Target Start/End: Complemental strand, 5897134 - 5897009
Alignment:
| Q |
124 |
ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact |
223 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||||||| ||| |||| | |||| ||||| || |||||||| ||||||| |||||| | ||||| ||| |
|
|
| T |
5897134 |
ttttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggaccaacgatgattccaagtccaaaaataaatcccaattccacact |
5897035 |
T |
|
| Q |
224 |
taaaaaattccaatcaattgaacaag |
249 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
5897034 |
taaaaaattccgttcaattgaacaag |
5897009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 338 - 424
Target Start/End: Complemental strand, 5849842 - 5849756
Alignment:
| Q |
338 |
ccttcaaaggaagaagcttgaaatgactgaagttgagtacctgtggaaatctcccccaccaaatgattgaaggagaggttctaataa |
424 |
Q |
| |
|
|||||||| || || |||| ||||||||||||||| |||||||| | |||| ||||||||||||||||||||| |||||| ||||| |
|
|
| T |
5849842 |
ccttcaaacgacgatgcttcaaatgactgaagttgggtacctgttgggatcttccccaccaaatgattgaaggataggttcaaataa |
5849756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 248
Target Start/End: Complemental strand, 5891279 - 5891158
Alignment:
| Q |
126 |
ttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatactta |
225 |
Q |
| |
|
||||||| ||||| |||||||||||| ||||||| ||| ||| | | |||| ||||||| ||||| | ||||||||||||||| | |||| ||||| |
|
|
| T |
5891279 |
ttgtctacgagtttccaataacttactctccatttcttccaaacaagagggga-ccaatgatgattccgaacccaaaaacaaatcccaactccacactta |
5891181 |
T |
|
| Q |
226 |
aaaaattccaatcaattgaacaa |
248 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
5891180 |
aaaaattccaatcaattgaacaa |
5891158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 249
Target Start/End: Original strand, 5551362 - 5551487
Alignment:
| Q |
124 |
ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact |
223 |
Q |
| |
|
|||||||| ||||| |||||| ||||| ||||||| ||| |||| | |||| || |||| ||||||||||||||||||||||| | |||| ||| |
|
|
| T |
5551362 |
ttttgtctgcgagtttccaatagcttactctccatttcttccaaaacaagaggggacagatgatgattccaagcccaaaaacaaatcccaactccacact |
5551461 |
T |
|
| Q |
224 |
taaaaaattccaatcaattgaacaag |
249 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
5551462 |
taaaaaattccagtcaattgaacaag |
5551487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 248
Target Start/End: Complemental strand, 5850060 - 5849936
Alignment:
| Q |
124 |
ttttgtctaggagttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatact |
223 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||||||| ||| |||| | |||| | |||| |||||| ||||||||||||||||| | |||| ||| |
|
|
| T |
5850060 |
ttttgtctacgagtttccaataacttactctccatttcttccaaaacaagaggggagtgatgataattccgagcccaaaaacaaatcccaactccacact |
5849961 |
T |
|
| Q |
224 |
taaaaaattccaatcaattgaacaa |
248 |
Q |
| |
|
|||||||||||| ||||| |||||| |
|
|
| T |
5849960 |
taaaaaattccagtcaatcgaacaa |
5849936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 334 - 424
Target Start/End: Complemental strand, 5854822 - 5854732
Alignment:
| Q |
334 |
gtttccttcaaaggaagaagcttgaaatgactgaagttgagtacctgtggaaatctcccccaccaaatgattgaaggagaggttctaataa |
424 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||| ||||| | |||| || ||||||| ||||||||| |||||| ||||| |
|
|
| T |
5854822 |
gtttccttcaaacgaagtcgcttgaaatgactgaagttgagttcctgtcgggatctttccaaccaaataattgaaggaaaggttcaaataa |
5854732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 5854981 - 5854911
Alignment:
| Q |
179 |
accaatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaag |
249 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| | |||||||| ||||||||||| ||||||||||||| |
|
|
| T |
5854981 |
accaatgatgattccgagcccaaaaacaaatcccaactccatactcaaaaaattccagtcaattgaacaag |
5854911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 338 - 424
Target Start/End: Complemental strand, 5888065 - 5887979
Alignment:
| Q |
338 |
ccttcaaaggaagaagcttgaaatgactgaagttgagtacctgtggaaatctcccccaccaaatgattgaaggagaggttctaataa |
424 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||||| |||||||| | |||| ||| |||||||||||||| || |||||| ||||| |
|
|
| T |
5888065 |
ccttcaaacgaagatgcttcaaatgactgaagttgggtacctgttgggatcttcccaaccaaatgattgaacgaaaggttcaaataa |
5887979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 610 - 654
Target Start/End: Original strand, 5563463 - 5563507
Alignment:
| Q |
610 |
atctgttgacctttattggaaactgtcatgctatcctgataatat |
654 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
5563463 |
atctgttgacctttaatggaaactgtcatactatcctgataatat |
5563507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 5423075 - 5423138
Alignment:
| Q |
183 |
atgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaac |
246 |
Q |
| |
|
|||||||||||||| ||||||| |||||| | |||| |||||| ||||||||||||||||||| |
|
|
| T |
5423075 |
atgaaaattccaaggccaaaaataaatcccaactccacacttaagaaattccaatcaattgaac |
5423138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 5467378 - 5467441
Alignment:
| Q |
183 |
atgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaac |
246 |
Q |
| |
|
|||||||||||||| ||||||| | |||| | ||||||||||| ||| ||||||||||||||| |
|
|
| T |
5467378 |
atgaaaattccaaggccaaaaatacatcccaactccatacttaagaaactccaatcaattgaac |
5467441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 5573183 - 5573064
Alignment:
| Q |
135 |
agttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattcc |
234 |
Q |
| |
|
|||| |||||| |||| |||||||| ||| |||| || || | |||||||| |||||| || ||||||||||| || | ||| | ||||||||| |||| |
|
|
| T |
5573183 |
agtttccaatatcttatcctccattgcttccaaaacattagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaatttcc |
5573084 |
T |
|
| Q |
235 |
aatcaattgaacaagatagc |
254 |
Q |
| |
|
| || |||||||||||||| |
|
|
| T |
5573083 |
agtctgttgaacaagatagc |
5573064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 5585390 - 5585271
Alignment:
| Q |
135 |
agttgccaataacttacgctccattgtttcaaaaatataagggaaccaatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattcc |
234 |
Q |
| |
|
|||| |||||| |||| |||||||| ||| |||| || || | |||||||| |||||| || ||||||||||| || | ||| | ||||||||| |||| |
|
|
| T |
5585390 |
agtttccaatatcttatcctccattgcttccaaaacattagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaatttcc |
5585291 |
T |
|
| Q |
235 |
aatcaattgaacaagatagc |
254 |
Q |
| |
|
| || |||||||||||||| |
|
|
| T |
5585290 |
agtctgttgaacaagatagc |
5585271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 654
Target Start/End: Original strand, 5856811 - 5856858
Alignment:
| Q |
607 |
tccatctgttgacctttattggaaactgtcatgctatcctgataatat |
654 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
5856811 |
tccatttgttgacctttattggaaattgtcacactatcctgataatat |
5856858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 201 - 565
Target Start/End: Original strand, 1481432 - 1481797
Alignment:
| Q |
201 |
aaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaagatagccctctacatgctggttgtgaatgcaa-tctctgctctttatcatct |
299 |
Q |
| |
|
|||| |||||| | ||||| ||||| ||||||||| |||| |||||||| |||||||||||||| |||||||| || ||| ||| ||||| | ||||| |
|
|
| T |
1481432 |
aaaataaatcctaattccacacttagaaaattccagtcaactgaacaagctagccctctacatgttggttgtggatccaagtcttgcctctt-accatct |
1481530 |
T |
|
| Q |
300 |
gactttttgctcaatggaggcccatataatcc-tagtttccttcaaaggaagaagcttgaaatgactgaagttgagtacctgtggaaatctcccccacca |
398 |
Q |
| |
|
| |||| |||||||||| ||||||| || | ||||||||||| |||||||| ||||||||||||||||||||||||| | |||| ||| |||| |
|
|
| T |
1481531 |
ggtttttcagtcaatggaggtccatatagcccatcatttccttcaaatgaagaagccggaaatgactgaagttgagtacctgttggaatcatccctacca |
1481630 |
T |
|
| Q |
399 |
aatgattgaaggagaggttctaataaataagaaagaagggacaagcttccaagattcacaggaattttgctaactaaaaagttatttgagaggcctaagg |
498 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| |||| || | ||| | |||||||||||| | | ||| |||||||||||||| |||||| |
|
|
| T |
1481631 |
aatgattgaaagagaggttc----aaataagaaagaaatgacatgcatacaatctgcacaggaattttaccgaacaaagagttatttgagaggtctaagg |
1481726 |
T |
|
| Q |
499 |
actc--attgtttcaagttccctatagaagacgggatttcgcctgag--accattgttagaaaagttgaga |
565 |
Q |
| |
|
|||| | ||||||| |||||| |||| || |||||||| || ||| | ||||||| |||||||||||| |
|
|
| T |
1481727 |
actctaactgtttcaggttcccaatagtcgatgggatttcaccggagaaagcattgtttgaaaagttgaga |
1481797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 20329827 - 20329764
Alignment:
| Q |
183 |
atgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaac |
246 |
Q |
| |
|
|||||||||||||| ||||||| |||||| | |||| |||||| ||||||||||||||||||| |
|
|
| T |
20329827 |
atgaaaattccaaggccaaaaataaatcccaactccacacttaagaaattccaatcaattgaac |
20329764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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