View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4560_high_1 (Length: 722)
Name: NF4560_high_1
Description: NF4560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4560_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 663; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 9 - 707
Target Start/End: Original strand, 17745000 - 17745698
Alignment:
| Q |
9 |
catcatcatcacaatttgtagaaaaatcaatttcttgttcttcaagtttagtagcagcttcccaagatggtatttttagcctcatatcaaagcttattga |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
17745000 |
catcatcatcacaatttgtagaaaaatcaatttcttgttcttcaagttttgaagcagcttcccaagatggtatttttagtctcatatcaaagcttattga |
17745099 |
T |
|
| Q |
109 |
cttgcatctttcatctaatattggtgaaccaaacacttccaatgttttccttggattctctacttgttgaagttgcattttgtaaggagaaaccttttct |
208 |
Q |
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| T |
17745100 |
cttgcatctttcatctaatattggtgaaccaaacacttccaatgttttccttggattatctacttgttgaagttgcattttgtaaggagaaaccttttct |
17745199 |
T |
|
| Q |
209 |
tgtttttgtaagtagatatctttgttcatcaagagttccgatgcagcacgagtctcggttttcttattcttaattgaatgatcagaagcatcttgatcat |
308 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17745200 |
tgtttttgcaagtagacatctttgttcatcaagagttccgatgtagcacgcgtctcggttttcttattcttaattgaatgatcagaagcatcttgatcat |
17745299 |
T |
|
| Q |
309 |
gtttgaagagtttttctgaggttgtttttccttgaactgcacttttgttgaagctgatttcacctgcatgatcacttacatcaacagaattcttatcata |
408 |
Q |
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| T |
17745300 |
gtttgaagagtttttctgaggttgtttttccttgaactgcacttttgttgaagctgatttcacctgcatgatcacttacatcaacagaattcttatcata |
17745399 |
T |
|
| Q |
409 |
acaagagcatttgcaaccaagagtagcaagaagactctttctatgaacttggttttttctactattacttgaagtagaatttttcaaagtagtttgtaaa |
508 |
Q |
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| T |
17745400 |
acaagagcatttgcaaccaagagtagcaagaagactctttctatgaacttgattttttctactattacttgaagtagaatttttcaaagtagtttgtaaa |
17745499 |
T |
|
| Q |
509 |
agtgcactttggctattcaagcttgattctgagccaacacttggagttccatattgaaccttgcactttctattctcttgttggtttttcaagtacttga |
608 |
Q |
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| T |
17745500 |
agtgcactttggctattcaagcttgattctgagccaacacttggagttccatattgaaccttgcactttctattctcttgttggtttttcaagtacttga |
17745599 |
T |
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| Q |
609 |
gtttattggcatctaaggtagcaattcttggagtttctatttcaactccattgaagtatttttcagcatcaaaaactccaatttctccatcttcttctt |
707 |
Q |
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| T |
17745600 |
gtttattggcatctaaggtagcaattcttggagtttctatttcaactccattgaagtatttttcagcatcaaaaactccaatttctccatcttcttctt |
17745698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 362 - 421
Target Start/End: Complemental strand, 24336469 - 24336410
Alignment:
| Q |
362 |
ctgatttcacctgcatgatcacttacatcaacagaattcttatcataacaagagcatttg |
421 |
Q |
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|||||||||| |||||| ||| ||| ||||||||||||||||||| |||||||||||||| |
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| T |
24336469 |
ctgatttcacttgcatggtcatttatatcaacagaattcttatcagaacaagagcatttg |
24336410 |
T |
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