View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4560_high_2 (Length: 481)
Name: NF4560_high_2
Description: NF4560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4560_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 108 - 270
Target Start/End: Complemental strand, 4015748 - 4015586
Alignment:
| Q |
108 |
gaaattgcacctccataattcacgatcacagacacgaaacccttcgctcttaacaataatcacgaagaacacaatctgtattccgggatatcacgttgaa |
207 |
Q |
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| T |
4015748 |
gaaattgcaccttcataattcacgatcacagacacgaaactcttcgctcttaaaaataatcacgaagaacacaatctgtattccgggatatcacgttgaa |
4015649 |
T |
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| Q |
208 |
cataaggaagaattcagcatcgttagacaccctatacatcgtgtattccaaaaccattccttc |
270 |
Q |
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| T |
4015648 |
cataaggaagaattcagcatcgttagacaccctatacatcgtgtattccaaaaccattccttc |
4015586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 4015866 - 4015775
Alignment:
| Q |
20 |
cgttcctccccgacgaactcatctttgaggtactttcatttcttccagtgggatctcttgtccgattcaggtgtgtgagtaagtcttggaaa |
111 |
Q |
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| T |
4015866 |
cgttcctccccgacgaactcatctttgaggtactttcatttcttccagtgagatctcttgttcgattcaggtgtgtgagtaagtcttggaaa |
4015775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 4015520 - 4015434
Alignment:
| Q |
276 |
gatagttgattcctgtaatggattgcttcttttggaagttgtttctaaaactgtttatggttttgagtactggctctgtgtttggaa |
362 |
Q |
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| T |
4015520 |
gatagttgattcctgtaatggattgcttcttttggaagttgtttctgaaactgtttatggttttgagtactggctctgtgtttggaa |
4015434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 398 - 462
Target Start/End: Complemental strand, 4015434 - 4015370
Alignment:
| Q |
398 |
atatttgtgaccccagtagagatttcggctttgcctttggatgtgacaattcaactggagcttat |
462 |
Q |
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| T |
4015434 |
atatttgtgaccctagtagagatttcgactttgcctttggatgtgataattcaactggagcttat |
4015370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 4017681 - 4017593
Alignment:
| Q |
23 |
tcctccccgacgaactcatctttgaggtactttcatttcttccagtgggatctcttgtccgattcaggtgtgtgagtaagtcttggaaa |
111 |
Q |
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| T |
4017681 |
tcctctccgaggatctcatcgtcgaggtactttcgtttcttcccgtgaaatctcttctccaatttaggtgtgtgagtaaatcttggaaa |
4017593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 10218156 - 10218221
Alignment:
| Q |
46 |
gaggtactttcatttcttccagtgggatctcttgtccgattcaggtgtgtgagtaagtcttggaaa |
111 |
Q |
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| T |
10218156 |
gaggtactttcctttcttccggtgaaatctcttgtttgcttcaggtgtgtgagtaaatcttggaaa |
10218221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 416 - 454
Target Start/End: Complemental strand, 4017225 - 4017187
Alignment:
| Q |
416 |
gagatttcggctttgcctttggatgtgacaattcaactg |
454 |
Q |
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| T |
4017225 |
gagatttcggctttgcatttggatgtgataattcaactg |
4017187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 21897422 - 21897357
Alignment:
| Q |
46 |
gaggtactttcatttcttccagtgggatctcttgtccgattcaggtgtgtgagtaagtcttggaaa |
111 |
Q |
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| T |
21897422 |
gaggtactttcgtttcttcctgttagatctcttattcgattcaggtctgtaagtaagtgttggaaa |
21897357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 29923025 - 29922935
Alignment:
| Q |
21 |
gttcctccccgacgaactcatctttgaggtactttcatttcttccagtgggatctcttgtccgattcaggtgtgtgagtaagtcttggaaa |
111 |
Q |
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| T |
29923025 |
gttcctcctcgacgatctcatcgctgaagtactttcctttcttccggtgaaacctcttcttcgattcaagagtgttagtaagtcttggaaa |
29922935 |
T |
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