View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4560_high_3 (Length: 240)

Name: NF4560_high_3
Description: NF4560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4560_high_3
NF4560_high_3
[»] chr1 (3 HSPs)
chr1 (78-137)||(7257902-7257961)
chr1 (10-72)||(7257800-7257862)
chr1 (188-240)||(7258005-7258057)


Alignment Details
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 7257902 - 7257961
Alignment:
Q  78 tcacagttataatagaatttcaatcttagtacaacatgaaccacaattaatagatgacag 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7257902 tcacagttataatagaatttcaatcttagtacaacatgaaccacaattaatagatgacag 7257961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 7257800 - 7257862
Alignment:
Q  10 catcatcataaacaggtgaatctcggaatgaattgaagggcctctcagaagagaaattattaa 72  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7257800 catcatcataaacaggtgaatctcggaatgaactgaagggcctctcagaagagaaattattaa 7257862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 7258005 - 7258057
Alignment:
Q  188 aatgaaatcaacttactactccaagttgttctgatgctttggccttccaaagt 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7258005 aatgaaatcaacttactactccaagttgttctgatgctttggccttccaaagt 7258057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University