View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4560_low_4 (Length: 246)
Name: NF4560_low_4
Description: NF4560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4560_low_4 |
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| [»] chr3 (4 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 13219764 - 13219527
Alignment:
| Q |
9 |
gacatcatcatggacataaagtcccaaagtatggaaccccagaaataggctggcccaacttaaatgggatatgatagcttctttgtgctctaacattctt |
108 |
Q |
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| T |
13219764 |
gacatcattatggacataaagtcccaaagtatggaaccccagaaataggctggcccaacttaaatgggatatgatagcttctttgtgctctaacattctt |
13219665 |
T |
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| Q |
109 |
gccaatacattatcctcattctgttcgggattataatcgcgaataaaaaatatcgctccatgagcaaaagcccctgtcataataaagcctgcaatgtatt |
208 |
Q |
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| T |
13219664 |
gccaatacattatcctcattctgttcgggattgtaatcccgaataaaaaatatcgctccatgagcaaaagcccctgtcataataaatcctgcaatgtatt |
13219565 |
T |
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| Q |
209 |
gatgatgagtatataacgcagcttgagtagtaaagtct |
246 |
Q |
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| T |
13219564 |
gatgatgagtatataacgcagcttgagtagtaaagtct |
13219527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 47842150 - 47842100
Alignment:
| Q |
196 |
cctgcaatgtattgatgatgagtatataacgcagcttgagtagtaaagtct |
246 |
Q |
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| T |
47842150 |
cctgcaatgtattgatgatgagtatataacgcagtttgagtagtaaagtct |
47842100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 47842226 - 47842185
Alignment:
| Q |
201 |
aatgtattgatgatgagtatataacgcagcttgagtagtaaa |
242 |
Q |
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| T |
47842226 |
aatgtattgatgatgagtatataacgcagcttgagtagtaaa |
47842185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 47842288 - 47842228
Alignment:
| Q |
120 |
atcctcattctgttcgggattataatcgcgaataaaaaatatcgctccatgagcaaaagcc |
180 |
Q |
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| T |
47842288 |
atcctcattctattcgggattgcaatctcgaataaagaatatcgctccataagcaaaagcc |
47842228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 10 - 246
Target Start/End: Complemental strand, 10996673 - 10996440
Alignment:
| Q |
10 |
acatcatcatggacataaagtcccaaagtatggaaccccagaaataggctggcccaacttaaatgggatatgatagcttctttgtgctctaacattcttg |
109 |
Q |
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| T |
10996673 |
acatcattatggacataaagtcccaaagtatggaaccctagaaataggatggctcaacttaaatgggatatgatagcttctttgtgctctaacat--ctg |
10996576 |
T |
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| Q |
110 |
ccaatacattatcctcattctgttcgggattataatcgcgaataaaaaatatcgctccatgagcaaaagcccctgtcataataaagcctgcaatgtattg |
209 |
Q |
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| T |
10996575 |
ccaatacattattctcattatgttcgggattgtaatctcaaat-aaaaatatcgttccatgagcaaaagctcatgtcataataaatcctgcaatgaattg |
10996477 |
T |
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| Q |
210 |
atgatgagtatataacgcagcttgagtagtaaagtct |
246 |
Q |
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| T |
10996476 |
atgatgagtatataccgcagcttgagctgtaaagtct |
10996440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 3065875 - 3065837
Alignment:
| Q |
199 |
gcaatgtattgatgatgagtatataacgcagcttgagta |
237 |
Q |
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| T |
3065875 |
gcaatgtattgatgatgactatataaggcagcttgagta |
3065837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 246
Target Start/End: Original strand, 237958 - 238182
Alignment:
| Q |
22 |
acataaagtcccaaagtatggaaccccagaaataggctggcccaacttaaatgggatatgatagcttctttgtgctctaacattcttgccaatacattat |
121 |
Q |
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|||||||| ||||| |||||||| || ||||| ||||| |||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
237958 |
acataaaggcccaaggtatggaatcctagaaagaggctagcccaacttaaatgagatatgatagcttctttatggtctaacattcttgccaatacattat |
238057 |
T |
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| Q |
122 |
cctcattctgttcgggattataatcgcgaataaaaaatatcgctccatgagcaaaagcccctgtcataataaagcctgcaatgtattgatgatgagtata |
221 |
Q |
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| T |
238058 |
cctcattctgttccggattgtaatccctaatgaaaaaaatagctccatgagcaaaagcccctgtcatgatgaaccccgcaatatattggtgatgagtata |
238157 |
T |
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| Q |
222 |
taacgcagcttgagtagtaaagtct |
246 |
Q |
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||| ||||||||||||||||||||| |
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| T |
238158 |
taaagcagcttgagtagtaaagtct |
238182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 18013446 - 18013484
Alignment:
| Q |
199 |
gcaatgtattgatgatgagtatataacgcagcttgagta |
237 |
Q |
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|||||||||||||||||| ||||||| |||||||||||| |
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| T |
18013446 |
gcaatgtattgatgatgactatataaggcagcttgagta |
18013484 |
T |
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