View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4560_low_6 (Length: 225)

Name: NF4560_low_6
Description: NF4560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4560_low_6
NF4560_low_6
[»] chr8 (7 HSPs)
chr8 (14-213)||(1661464-1661662)
chr8 (15-158)||(11144158-11144300)
chr8 (71-154)||(1604132-1604215)
chr8 (71-154)||(11143801-11143884)
chr8 (155-213)||(1604258-1604316)
chr8 (155-213)||(11143700-11143758)
chr8 (14-110)||(44551873-44551967)
[»] chr3 (3 HSPs)
chr3 (14-158)||(55039982-55040125)
chr3 (71-154)||(55040399-55040482)
chr3 (155-213)||(55040525-55040583)
[»] chr7 (4 HSPs)
chr7 (14-158)||(13948038-13948181)
chr7 (155-213)||(13947655-13947713)
chr7 (91-154)||(13947756-13947819)
chr7 (71-124)||(1972595-1972648)
[»] chr1 (12 HSPs)
chr1 (14-158)||(35163403-35163546)
chr1 (14-158)||(29393908-29394051)
chr1 (15-158)||(30402754-30402896)
chr1 (15-158)||(30409311-30409453)
chr1 (71-154)||(29394325-29394408)
chr1 (71-154)||(30403170-30403253)
chr1 (71-154)||(30409727-30409810)
chr1 (71-154)||(35163046-35163129)
chr1 (155-213)||(29394451-29394509)
chr1 (155-213)||(30403296-30403354)
chr1 (155-213)||(30409853-30409911)
chr1 (155-213)||(35162945-35163003)
[»] chr5 (3 HSPs)
chr5 (14-154)||(9260479-9260618)
chr5 (14-154)||(9260842-9260981)
chr5 (155-213)||(9261024-9261082)
[»] chr6 (3 HSPs)
chr6 (155-213)||(2311901-2311959)
chr6 (15-103)||(32445856-32445943)
chr6 (75-110)||(14986967-14987002)
[»] chr4 (3 HSPs)
chr4 (71-124)||(36892665-36892718)
chr4 (162-213)||(46623737-46623788)
chr4 (127-155)||(46623660-46623688)
[»] chr2 (1 HSPs)
chr2 (71-124)||(26450122-26450175)


Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 1661464 - 1661662
Alignment:
Q  14 caacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactattttctc 113  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||       |||||||||||||||| |||||||||||||||||||||||||||||    
T  1661464 caacacagaggcaccacacagcctgctgtccctcgagagcacaccataaaaaa-cataaaccacctcgacgaagtccaccaaaactatcactattttctc 1661562  T
Q  114 aaaggacaatctttatcaatttatgtaaagtttatttatttatttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1661563 aaaggacaatctttatcaatttatgtaaagtttatttatttatttacatctaatgaaactatatttcatattagttattcacacccattatcgtgatgat 1661662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 11144300 - 11144158
Alignment:
Q  15 aacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactattttctca 114  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||    
T  11144300 aacactgaggcaccacacagcctgctgtccttcgagagcacacca-caaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctca 11144202  T
Q  115 aaggacaatctttatcaatttatgtaaagtttatttatttattt 158  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||    
T  11144201 aaggacagtctttatcaatttatgtaaagtttatttaattattt 11144158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 1604132 - 1604215
Alignment:
Q  71 aaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaagtttatttattt 154  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1604132 aaaccacatcgacaaagtccaccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagtttatttattt 1604215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 11143884 - 11143801
Alignment:
Q  71 aaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaagtttatttattt 154  Q
    ||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11143884 aaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagtttatttattt 11143801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 1604258 - 1604316
Alignment:
Q  155 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1604258 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 1604316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 11143758 - 11143700
Alignment:
Q  155 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11143758 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 11143700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 44551967 - 44551873
Alignment:
Q  14 caacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactatttt 110  Q
    |||||||||||||| |||||||| |||| |||||||||| ||||||        || |||| |||||||||||||||||||||||||||||||||||    
T  44551967 caacacagaggcactacacagcctgctgcccctcgagagaacacca-caaaaaacagaaac-acctcgacaaagtccaccaaaactatcactatttt 44551873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 55039982 - 55040125
Alignment:
Q  14 caacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactattttctc 113  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||    
T  55039982 caacacagaggcaccacacagcctgctgtccctcgagagcacacca-caaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctc 55040080  T
Q  114 aaaggacaatctttatcaatttatgtaaagtttatttatttattt 158  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  55040081 aaaggataatctttatcaatttatgtaaagtttatttatttattt 55040125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 55040399 - 55040482
Alignment:
Q  71 aaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaagtttatttattt 154  Q
    ||||||||||||||||||  ||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  55040399 aaaccacctcgacaaagtataccaaaaatatcactattttctcaaaagacaatcttcatcaatttatgtaaagtttatttattt 55040482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 55040525 - 55040583
Alignment:
Q  155 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 213  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  55040525 atttacatctaatgaaactatatttcatattagttattcacacccattatcgtgatgat 55040583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 13948181 - 13948038
Alignment:
Q  14 caacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactattttctc 113  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||        ||||||||||||||||||||||| ||||||||||||||||||||||    
T  13948181 caacacagaggcaccacacagcctgctgtccctcgagaacacacca-caaaaaacataaaccacctcgacaaagtcccccaaaactatcactattttctc 13948083  T
Q  114 aaaggacaatctttatcaatttatgtaaagtttatttatttattt 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13948082 aaaggacaatctttatcaatttatgtaaagtttatttatttattt 13948038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 13947713 - 13947655
Alignment:
Q  155 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13947713 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 13947655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 13947819 - 13947756
Alignment:
Q  91 accaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaagtttatttattt 154  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13947819 accaaaactatcattattttctcaaaagacaatctttatcaatttatgtaaagtttatttattt 13947756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 1972648 - 1972595
Alignment:
Q  71 aaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatc 124  Q
    ||||||| |||| ||||||||||||||||| ||||||||||||||  |||||||    
T  1972648 aaaccacttcgaaaaagtccaccaaaactaccactattttctcaacagacaatc 1972595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 5e-52; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 35163546 - 35163403
Alignment:
Q  14 caacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactattttctc 113  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||        |||||||||| |||||||||||||||||||||||||||||||||||    
T  35163546 caacacagaggcaccacacagcctgttgtccctcgagagcacacca-caaaaaacataaaccacttcgacaaagtccaccaaaactatcactattttctc 35163448  T
Q  114 aaaggacaatctttatcaatttatgtaaagtttatttatttattt 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  35163447 aaaggacaatctttatcaatttatgtaaagtttatttatttattt 35163403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 29393908 - 29394051
Alignment:
Q  14 caacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactattttctc 113  Q
    |||||||||||||| ||||| || ||||| ||||||||||||| ||        ||||||||||||||||||||||||||||||||||||||||||||||    
T  29393908 caacacagaggcactacacatcctgctgttcctcgagagcacatca-caaaaaacataaaccacctcgacaaagtccaccaaaactatcactattttctc 29394006  T
Q  114 aaaggacaatctttatcaatttatgtaaagtttatttatttattt 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29394007 aaaggacaatctttatcaatttatgtaaagtttatttatttattt 29394051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 30402754 - 30402896
Alignment:
Q  15 aacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactattttctca 114  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||        ||||||||||||||||| |||||||||||||||||||||||||||||    
T  30402754 aacactgaggcaccacacagcctgctgtccttcgagagcacacca-caaaaaacataaaccacctcgacagagtccaccaaaactatcactattttctca 30402852  T
Q  115 aaggacaatctttatcaatttatgtaaagtttatttatttattt 158  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||    
T  30402853 aaggacagtctttttcaatttatgtaaagtttatttatttattt 30402896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 30409311 - 30409453
Alignment:
Q  15 aacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactattttctca 114  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||||        ||||||||||||||||| |||||||||||||||||||||||||||||    
T  30409311 aacactgaggcaccacacagcctgctgtccttcgagagcacacca-caaaaaacataaaccacctcgacagagtccaccaaaactatcactattttctca 30409409  T
Q  115 aaggacaatctttatcaatttatgtaaagtttatttatttattt 158  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||    
T  30409410 aaggacagtctttttcaatttatgtaaagtttatttatttattt 30409453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 29394325 - 29394408
Alignment:
Q  71 aaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaagtttatttattt 154  Q
    ||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29394325 aaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagtttatttattt 29394408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 30403170 - 30403253
Alignment:
Q  71 aaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaagtttatttattt 154  Q
    ||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30403170 aaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagtttatttattt 30403253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 30409727 - 30409810
Alignment:
Q  71 aaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaagtttatttattt 154  Q
    ||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30409727 aaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcaatttatgtaaagtttatttattt 30409810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 154
Target Start/End: Complemental strand, 35163129 - 35163046
Alignment:
Q  71 aaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatctttatcaatttatgtaaagtttatttattt 154  Q
    ||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||    
T  35163129 aaaccacctcgacaaagtataccaaaactatcactattttctcaaaagacaatctttatcactttatgtaaagtttttttattt 35163046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 29394451 - 29394509
Alignment:
Q  155 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29394451 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 29394509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 30403296 - 30403354
Alignment:
Q  155 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30403296 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 30403354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 30409853 - 30409911
Alignment:
Q  155 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30409853 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 30409911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 35163003 - 35162945
Alignment:
Q  155 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35163003 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 35162945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 9260479 - 9260618
Alignment:
Q  14 caacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactattttctc 113  Q
    |||||| ||||||| |||||||| |||||||||||||||||||| |        || |||||||||||||||||||||||||||||||| ||||||||||    
T  9260479 caacaccgaggcactacacagcctgctgtccctcgagagcacacta-caaaaaacaaaaaccacctcgacaaagtccaccaaaactatcgctattttctc 9260577  T
Q  114 aaaggacaatctttatcaatttatgtaaagtttatttattt 154  Q
    ||| |||||||||||||||||||| ||||||||||||||||    
T  9260578 aaaagacaatctttatcaatttatataaagtttatttattt 9260618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 9260842 - 9260981
Alignment:
Q  14 caacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatcactattttctc 113  Q
    |||||||||||||| |||||||| |||| |||||||||||||||||        || |||||||||||||||| ||||||||||||||||||||||||||    
T  9260842 caacacagaggcactacacagcctgctgcccctcgagagcacacca-caaaaaacagaaaccacctcgacaaaatccaccaaaactatcactattttctc 9260940  T
Q  114 aaaggacaatctttatcaatttatgtaaagtttatttattt 154  Q
    ||  |||||||| ||||||||||||||||||||||||||||    
T  9260941 aacagacaatctctatcaatttatgtaaagtttatttattt 9260981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 9261024 - 9261082
Alignment:
Q  155 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 213  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9261024 atttagatctaatggaactatatttcatattagttattcactcccattatcgtgatgat 9261082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 2311901 - 2311959
Alignment:
Q  155 atttacatctaatggaactatatttcatattagttattcacacccattatcgtgatgat 213  Q
    ||||| ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||    
T  2311901 atttagatctaatggaactatatttgatattaggtattcactcccattatcgtgatgat 2311959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 32445943 - 32445856
Alignment:
Q  15 aacacagaggcaccacacagccagctgtccctcgagagcacaccatnnnnnnncataaaccacctcgacaaagtccaccaaaactatca 103  Q
    |||| |||||||| |||||||| |||| |||||||||||||||||        || |||||||||||||||||||||||||||||||||    
T  32445943 aacaaagaggcactacacagcctgctgcccctcgagagcacacca-caaaaaacagaaaccacctcgacaaagtccaccaaaactatca 32445856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 14986967 - 14987002
Alignment:
Q  75 cacctcgacaaagtccaccaaaactatcactatttt 110  Q
    ||||||||||||||||||||||||||||||||||||    
T  14986967 cacctcgacaaagtccaccaaaactatcactatttt 14987002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 36892718 - 36892665
Alignment:
Q  71 aaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatc 124  Q
    ||||||| |||||||||||||||||||||||||||||||||||||  |||||||    
T  36892718 aaaccacttcgacaaagtccaccaaaactatcactattttctcaacagacaatc 36892665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 46623737 - 46623788
Alignment:
Q  162 tctaatggaactatatttcatattagttattcacacccattatcgtgatgat 213  Q
    |||||||||||||||||||||| |||||| ||||||||||||| ||||||||    
T  46623737 tctaatggaactatatttcataatagttaatcacacccattatggtgatgat 46623788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 46623660 - 46623688
Alignment:
Q  127 tatcaatttatgtaaagtttatttattta 155  Q
    |||||||||||||||||||||||||||||    
T  46623660 tatcaatttatgtaaagtttatttattta 46623688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 26450175 - 26450122
Alignment:
Q  71 aaaccacctcgacaaagtccaccaaaactatcactattttctcaaaggacaatc 124  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||  |||||||    
T  26450175 aaaccacttcgacaaagtccaccaaaactaccactattttctcaacagacaatc 26450122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University