View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4560_low_7 (Length: 206)

Name: NF4560_low_7
Description: NF4560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4560_low_7
NF4560_low_7
[»] chr5 (3 HSPs)
chr5 (9-93)||(33910115-33910199)
chr5 (3-44)||(38500941-38500982)
chr5 (4-44)||(35301624-35301664)
[»] chr1 (6 HSPs)
chr1 (7-44)||(4906855-4906892)
chr1 (5-42)||(14442260-14442297)
chr1 (3-44)||(18610771-18610812)
chr1 (2-43)||(46910403-46910444)
chr1 (1-37)||(30198011-30198047)
chr1 (3-43)||(39669805-39669845)
[»] chr4 (7 HSPs)
chr4 (4-44)||(940292-940332)
chr4 (4-43)||(4914905-4914944)
chr4 (4-52)||(22819639-22819687)
chr4 (4-44)||(33278673-33278713)
chr4 (3-43)||(35017152-35017192)
chr4 (3-43)||(43168746-43168786)
chr4 (4-44)||(53662461-53662501)
[»] chr6 (4 HSPs)
chr6 (2-37)||(33825402-33825437)
chr6 (3-44)||(11785353-11785394)
chr6 (4-44)||(27334856-27334896)
chr6 (4-44)||(27395596-27395636)
[»] chr3 (6 HSPs)
chr3 (3-42)||(45205288-45205327)
chr3 (4-42)||(51873393-51873431)
chr3 (1-42)||(37134636-37134677)
chr3 (4-44)||(7867744-7867784)
chr3 (4-44)||(35376584-35376624)
chr3 (4-44)||(53932424-53932464)
[»] chr8 (2 HSPs)
chr8 (4-44)||(6004942-6004982)
chr8 (4-44)||(36497659-36497699)
[»] chr7 (2 HSPs)
chr7 (4-44)||(15564909-15564949)
chr7 (4-44)||(21822632-21822672)
[»] chr2 (1 HSPs)
chr2 (4-44)||(18531599-18531639)


Alignment Details
Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 33910115 - 33910199
Alignment:
Q  9 ttgtcacaaaatagttgtgcaaatatcatgtctcttgataatatatctggcttgcatatttagaaatctctgattaacattttag 93  Q
    |||||| ||||| ||||  |||||||||| ||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  33910115 ttgtcaaaaaatggttgaacaaatatcatttcttttgataatagatccggcttgcatatttagaaatctctgattaacattttag 33910199  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 38500982 - 38500941
Alignment:
Q  3 aaaaaattgtcacaaaatagttgtgcaaatatcatgtctctt 44  Q
    |||||||||||||||||| ||||| |||||||||| ||||||    
T  38500982 aaaaaattgtcacaaaatggttgtacaaatatcatttctctt 38500941  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 35301624 - 35301664
Alignment:
Q  4 aaaaattgtcacaaaatagttgtgcaaatatcatgtctctt 44  Q
    ||||||||||||||||| ||||| |||||||||| ||||||    
T  35301624 aaaaattgtcacaaaatggttgttcaaatatcatctctctt 35301664  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 4906855 - 4906892
Alignment:
Q  7 aattgtcacaaaatagttgtgcaaatatcatgtctctt 44  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  4906855 aattgtcacaaaatagttgtgcaaatatcatttctctt 4906892  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 14442297 - 14442260
Alignment:
Q  5 aaaattgtcacaaaatagttgtgcaaatatcatgtctc 42  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  14442297 aaaattgtcacaaaatagttgtacaaatatcatctctc 14442260  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 18610812 - 18610771
Alignment:
Q  3 aaaaaattgtcacaaaatagttgtgcaaatatcatgtctctt 44  Q
    ||||| |||||||||||||||||| |||||||||| ||||||    
T  18610812 aaaaagttgtcacaaaatagttgtacaaatatcatttctctt 18610771  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 46910444 - 46910403
Alignment:
Q  2 taaaaaattgtcacaaaatagttgtgcaaatatcatgtctct 43  Q
    ||||||||||||||||||||||||| || ||||||| |||||    
T  46910444 taaaaaattgtcacaaaatagttgtacatatatcatttctct 46910403  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30198047 - 30198011
Alignment:
Q  1 ttaaaaaattgtcacaaaatagttgtgcaaatatcat 37  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  30198047 ttaaaaatttgtcacaaaatagttgtacaaatatcat 30198011  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 39669845 - 39669805
Alignment:
Q  3 aaaaaattgtcacaaaatagttgtgcaaatatcatgtctct 43  Q
    |||||||||||||||||| ||||| |||||||||| |||||    
T  39669845 aaaaaattgtcacaaaatggttgtacaaatatcatttctct 39669805  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 940292 - 940332
Alignment:
Q  4 aaaaattgtcacaaaatagttgtgcaaatatcatgtctctt 44  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  940292 aaaaattgtcacaaaatagttgtacaaatatcatttctctt 940332  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 4914944 - 4914905
Alignment:
Q  4 aaaaattgtcacaaaatagttgtgcaaatatcatgtctct 43  Q
    ||||||||||||||||||||||| |||||||||| |||||    
T  4914944 aaaaattgtcacaaaatagttgttcaaatatcatttctct 4914905  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 22819687 - 22819639
Alignment:
Q  4 aaaaattgtcacaaaatagttgtgcaaatatcatgtctcttgataatat 52  Q
    |||| |||||||||||| | ||| |||||||||| ||||||||||||||    
T  22819687 aaaagttgtcacaaaatggatgttcaaatatcatttctcttgataatat 22819639  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 33278713 - 33278673
Alignment:
Q  4 aaaaattgtcacaaaatagttgtgcaaatatcatgtctctt 44  Q
    |||| |||||||||||||||||| |||||||||| ||||||    
T  33278713 aaaagttgtcacaaaatagttgttcaaatatcatttctctt 33278673  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 35017192 - 35017152
Alignment:
Q  3 aaaaaattgtcacaaaatagttgtgcaaatatcatgtctct 43  Q
    ||||| |||||||||||||||||| |||||||||| |||||    
T  35017192 aaaaagttgtcacaaaatagttgtacaaatatcatttctct 35017152  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 43168746 - 43168786
Alignment:
Q  3 aaaaaattgtcacaaaatagttgtgcaaatatcatgtctct 43  Q
    |||||||||||||||||| ||||| |||||||||| |||||    
T  43168746 aaaaaattgtcacaaaatggttgtacaaatatcatttctct 43168786  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 53662461 - 53662501
Alignment:
Q  4 aaaaattgtcacaaaatagttgtgcaaatatcatgtctctt 44  Q
    ||||||||| ||||||||||||| |||||||||| ||||||    
T  53662461 aaaaattgttacaaaatagttgtacaaatatcatttctctt 53662501  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 33825437 - 33825402
Alignment:
Q  2 taaaaaattgtcacaaaatagttgtgcaaatatcat 37  Q
    |||||||||||||| |||||||||||||||||||||    
T  33825437 taaaaaattgtcactaaatagttgtgcaaatatcat 33825402  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 11785394 - 11785353
Alignment:
Q  3 aaaaaattgtcacaaaatagttgtgcaaatatcatgtctctt 44  Q
    |||||||||||||||||| ||||| |||||||||| ||||||    
T  11785394 aaaaaattgtcacaaaatggttgtacaaatatcatttctctt 11785353  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 27334896 - 27334856
Alignment:
Q  4 aaaaattgtcacaaaatagttgtgcaaatatcatgtctctt 44  Q
    |||| |||||||||||||||||| |||||||||| ||||||    
T  27334896 aaaagttgtcacaaaatagttgtacaaatatcatttctctt 27334856  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 27395636 - 27395596
Alignment:
Q  4 aaaaattgtcacaaaatagttgtgcaaatatcatgtctctt 44  Q
    |||| |||||||||||||||||| |||||||||| ||||||    
T  27395636 aaaagttgtcacaaaatagttgtacaaatatcatttctctt 27395596  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 45205327 - 45205288
Alignment:
Q  3 aaaaaattgtcacaaaatagttgtgcaaatatcatgtctc 42  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  45205327 aaaaaattgtcacaaaatagttgtacaaatatcatttctc 45205288  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 51873431 - 51873393
Alignment:
Q  4 aaaaattgtcacaaaatagttgtgcaaatatcatgtctc 42  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  51873431 aaaaattgtcacaaaatagttgttcaaatatcatttctc 51873393  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37134636 - 37134677
Alignment:
Q  1 ttaaaaaattgtcacaaaatagttgtgcaaatatcatgtctc 42  Q
    |||||||||||||| ||||||||||| |||||||||| ||||    
T  37134636 ttaaaaaattgtcataaaatagttgtacaaatatcatttctc 37134677  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 7867744 - 7867784
Alignment:
Q  4 aaaaattgtcacaaaatagttgtgcaaatatcatgtctctt 44  Q
    |||| |||||||||||||||||| |||||||||| ||||||    
T  7867744 aaaagttgtcacaaaatagttgtacaaatatcatttctctt 7867784  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 35376584 - 35376624
Alignment:
Q  4 aaaaattgtcacaaaatagttgtgcaaatatcatgtctctt 44  Q
    ||||||||||||||||| ||||| |||||||||| ||||||    
T  35376584 aaaaattgtcacaaaatggttgtacaaatatcatttctctt 35376624  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 53932424 - 53932464
Alignment:
Q  4 aaaaattgtcacaaaatagttgtgcaaatatcatgtctctt 44  Q
    ||||||||||||||||| ||||| |||||||||| ||||||    
T  53932424 aaaaattgtcacaaaatggttgtacaaatatcatttctctt 53932464  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 6004982 - 6004942
Alignment:
Q  4 aaaaattgtcacaaaatagttgtgcaaatatcatgtctctt 44  Q
    ||||||||||||||| ||||||| |||||||||| ||||||    
T  6004982 aaaaattgtcacaaagtagttgtacaaatatcatttctctt 6004942  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 36497699 - 36497659
Alignment:
Q  4 aaaaattgtcacaaaatagttgtgcaaatatcatgtctctt 44  Q
    |||| |||||||||||||||||| |||||||||| ||||||    
T  36497699 aaaagttgtcacaaaatagttgtacaaatatcatttctctt 36497659  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 15564949 - 15564909
Alignment:
Q  4 aaaaattgtcacaaaatagttgtgcaaatatcatgtctctt 44  Q
    |||||||||| |||||||||||| |||||||||| ||||||    
T  15564949 aaaaattgtcgcaaaatagttgtacaaatatcatttctctt 15564909  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 21822632 - 21822672
Alignment:
Q  4 aaaaattgtcacaaaatagttgtgcaaatatcatgtctctt 44  Q
    ||||||||||||||||||| ||| |||||||||| ||||||    
T  21822632 aaaaattgtcacaaaatagatgttcaaatatcatttctctt 21822672  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 18531639 - 18531599
Alignment:
Q  4 aaaaattgtcacaaaatagttgtgcaaatatcatgtctctt 44  Q
    ||||||||||| ||||||||||| |||||||||| ||||||    
T  18531639 aaaaattgtcaaaaaatagttgtacaaatatcatttctctt 18531599  T

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