View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4561-Insertion-1 (Length: 1100)
Name: NF4561-Insertion-1
Description: NF4561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4561-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 503; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 8 - 549
Target Start/End: Original strand, 16405005 - 16405547
Alignment:
| Q |
8 |
aatacatataaaatcttaacatttttacttcatcttgtttgcaattctcccacttttctctcattttcctttcattttcacattcttttaagtcttaatt |
107 |
Q |
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| T |
16405005 |
aatacatataaaatcttaacatttttacttcatcttgtttgtaattctcccacttttctctcattttcttttcattttcacattcttttaagtcttaatt |
16405104 |
T |
|
| Q |
108 |
acggtttgggtccatctttttgtcacccactaacaaaattggtcccccacccctcgtttttatatagctatgatttctcattcagatttt-ttaacttga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
16405105 |
acggtttgggtccatctttttgtcacccactaacaaaattggtcccccacccctcgtttttatatagctatgatttctcattcagatttttttaacttga |
16405204 |
T |
|
| Q |
207 |
aagtagtgatctatcaaatttaaattgaagtttttggttgtaattttatggttgttcgtcattctacattatcaaatcgtatgacacgtcatttaaaata |
306 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16405205 |
aagtagtgatctatcaaatataaattgaagtttttggttgtaattttatggttgttcgtcattctacattatcaaatcgtatgatacgtcatttaaaata |
16405304 |
T |
|
| Q |
307 |
tgttattatcattttcttttagttcaaaaatagtatgagaaaagaacaaaatcggataattttaaaatttaggaacctattcagagacgtcgatgacgac |
406 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
16405305 |
tgttattatcattttcttttaattcaaaaatagtatgagaaaagaacaaaatcggataattttaaaatttaggaacctattcggagacgtcgatgacgac |
16405404 |
T |
|
| Q |
407 |
agcaacaattaaatattatctactcaatcacatacttaaacatagaagtgttagtcacaaaaatggtagtggtgttagtcacaaaaataacttgttcgtg |
506 |
Q |
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| T |
16405405 |
aacaacaattaaatattatctactcaatcacatacttaaacatagaagtgttagtcacaaaaatggcagtggtgttagtcacaaaaataacttgttcgtg |
16405504 |
T |
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| Q |
507 |
atgctttgtgaaaaagtttttcgctataactagcattattctt |
549 |
Q |
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| T |
16405505 |
atgctttgtgaaaaagtttttcgctataactagcattattctt |
16405547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 179; E-Value: 5e-96
Query Start/End: Original strand, 780 - 1033
Target Start/End: Original strand, 16406495 - 16406751
Alignment:
| Q |
780 |
atatcttgatccaattgtcatccatatattagctgcatgaattcagaatatattatcctaattgcaatgaatatttattttcatttttatcaaaccatga |
879 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
16406495 |
atatcttgatccaattgtcatccatatattagctgcatgaagttagaatatattatcctaattgcaatgaatatttattttcgtttttatcaaaccatga |
16406594 |
T |
|
| Q |
880 |
ccatatatttcacctttttagcgaaaacaatatctttgtaactccttgggcattct-cttgtaaaggaaaagtgagagacgtagaggggtatgttataat |
978 |
Q |
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| T |
16406595 |
tcatatatttcacctttttagcgaaaacaatatctttgtaactccttgggcattctccttgtaaagg-gaagtgagagacgtagaggggtatgttataat |
16406693 |
T |
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| Q |
979 |
tttggtggtggac-atcgatgtggtttat-ctat-ctatagtatag-actttctcactg |
1033 |
Q |
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|||||| |||||| |||||||| |||||| |||| ||||||||||| |||||||||||| |
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| T |
16406694 |
tttggt-gtggacaatcgatgtagtttatcctatcctatagtatagaactttctcactg |
16406751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 577 - 714
Target Start/End: Original strand, 16406327 - 16406464
Alignment:
| Q |
577 |
actcaatcacatacttaaacatagaagtgtttgtagatacaccaccaccactttctcgagctcaagtcttcattctctacttctagtttgcactccaact |
676 |
Q |
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| T |
16406327 |
actcaatcacatacttaaacatagaagtgcttatagatacaccaccactgctttctcgagctcaagtcttcattctctacttctagtttgcactccaact |
16406426 |
T |
|
| Q |
677 |
gctactagattagtgttcattagatcatgattcaagct |
714 |
Q |
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| T |
16406427 |
gctactagattagtgttcattagatcatgattcaagct |
16406464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 573 - 607
Target Start/End: Original strand, 16405422 - 16405456
Alignment:
| Q |
573 |
atctactcaatcacatacttaaacatagaagtgtt |
607 |
Q |
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| T |
16405422 |
atctactcaatcacatacttaaacatagaagtgtt |
16405456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 498 - 546
Target Start/End: Complemental strand, 43224765 - 43224717
Alignment:
| Q |
498 |
ttgttcgtgatgctttgtgaaaaagtttttcgctataactagcattatt |
546 |
Q |
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||||||||||| ||| |||||||| ||||||||||||||||||||||| |
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| T |
43224765 |
ttgttcgtgatccttcttgaaaaagattttcgctataactagcattatt |
43224717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 38470228 - 38470289
Alignment:
| Q |
246 |
gtaattttatggttgttcgtcattctacattatcaaatcgtatgacacgtcatttaaaatat |
307 |
Q |
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| T |
38470228 |
gtaatttcatggttgttgttcattctacatcattaagttgtatgacacgtcatttaaaatat |
38470289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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