View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4561-Insertion-12 (Length: 149)
Name: NF4561-Insertion-12
Description: NF4561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4561-Insertion-12 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 2e-72; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 53424531 - 53424672
Alignment:
| Q |
8 |
cttgcctctcctccttcttggtcaataatatgaacaagacctaatccacccatctcttgcaccattttaatcttgtcatagattgtgtaaccatcatcta |
107 |
Q |
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| T |
53424531 |
cttgcctctcctccttcttggtcaataatatgaacaagacctaatccacccatctcttgcgccattttaatcttgtcatagattgtgtaaccatcatcta |
53424630 |
T |
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| Q |
108 |
tgccatcacatatgacaatctttcctttgactttgttcgtat |
149 |
Q |
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| T |
53424631 |
tgccatcacatatgacaatctttcctttgactttgttcgtat |
53424672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 141
Target Start/End: Original strand, 53431698 - 53431816
Alignment:
| Q |
26 |
tggtcaataatatgaacaagacctaatccacccatctcttgcaccattttaatcttgtcatagattgtgtaaccatcatc---tatgccatcacatatga |
122 |
Q |
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| T |
53431698 |
tggtcagtaatatgaacaagacctaatccacccatcccttgcaccgttttaattttgttattggttgagtaatcatcatcacttattccatcacaaatga |
53431797 |
T |
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| Q |
123 |
caatctttcctttgacttt |
141 |
Q |
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| T |
53431798 |
caatctttcctttgacttt |
53431816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 48374016 - 48373972
Alignment:
| Q |
26 |
tggtcaataatatgaacaagacctaatccacccatctcttgcacc |
70 |
Q |
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| T |
48374016 |
tggtcagtaatatgaacaagacctaatccacccgcctcttgcacc |
48373972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 141
Target Start/End: Original strand, 26096526 - 26096556
Alignment:
| Q |
111 |
catcacatatgacaatctttcctttgacttt |
141 |
Q |
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| T |
26096526 |
catcacatatgacaatctttcctttgacttt |
26096556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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