View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4561-Insertion-4 (Length: 586)
Name: NF4561-Insertion-4
Description: NF4561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4561-Insertion-4 |
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| [»] scaffold0565 (2 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 38 - 280
Target Start/End: Original strand, 3575 - 3817
Alignment:
| Q |
38 |
cttataagcaccactaaaaactctttagagttgagctaagcgattaatatcaatagggtaagcatctgatgcggattgagcattgtaagctcttctacca |
137 |
Q |
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| T |
3575 |
cttataagcaccactaaaagctctttagagttgagctaagcgattaatatcaatagggtaagcatctgatgcagattgagcattgtaagctcttctacca |
3674 |
T |
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| Q |
138 |
ataatactatttccagcttcagttggatgaaatgcatcccaaaataagaacccattcctatccctacatgcaggttgaaagggcaaacatgtaatttgac |
237 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3675 |
ataacactgtttccagcttcagttggatgaaatgcatcccaaaataagaacccattcctatccctacatgcaggttgaaagggcaaacatgtaatttgac |
3774 |
T |
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| Q |
238 |
cattgtttcttcctacaccacagcatccagcatttgtaactct |
280 |
Q |
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| T |
3775 |
cattgtttcttcctacaccacagcatccagcatttgtaactct |
3817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 360 - 586
Target Start/End: Original strand, 3898 - 4124
Alignment:
| Q |
360 |
agggagaaaataattaccataggttgatgggctggttatgatgtcttgaaagataccataaacatttacataaatgaatcttgcatcaggaagttggtta |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3898 |
agggagaaaataattaccataggttgatgggctggttatgatgtcttgaaagataccataaacatttacataaatgaatcttgcatcaggaagttggtta |
3997 |
T |
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| Q |
460 |
ttgagttgatcaacaagagatcttaatccattgttgaataattgatttgcagaattgattcttgctacacatgttctaccatctgggctgttttgggcca |
559 |
Q |
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| T |
3998 |
ttgagttgatcaacaagagatcttaatccattgttgaataattgatttgcagaattgattcttgctacacatgttctaccatctgggctgttttgggcca |
4097 |
T |
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| Q |
560 |
atgcatttggggtgcaacctatttgac |
586 |
Q |
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| T |
4098 |
atgcatttggggtgcaacctatttgac |
4124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 5e-48; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 68 - 277
Target Start/End: Complemental strand, 7617315 - 7617106
Alignment:
| Q |
68 |
ttgagctaagcgattaatatcaatagggtaagcatctgatgcggattgagcattgtaagctcttctaccaataatactatttccagcttcagttggatga |
167 |
Q |
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| T |
7617315 |
ttgagctaagcgattgatgtcaataggataagcatctgattcagattgagcattgtaagctctcctaccaattatagtgttgccaacctcagttgggtga |
7617216 |
T |
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| Q |
168 |
aatgcatcccaaaataagaacccattcctatccctacatgcaggttgaaagggcaaacatgtaatttgaccattgtttcttcctacaccacagcatccag |
267 |
Q |
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| T |
7617215 |
aatgcatcccaaaataggtactcattcctattactacatggggtttgaaggggcaaacatgtaatttgaccattgtttcttcctattccacaacaccctt |
7617116 |
T |
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| Q |
268 |
catttgtaac |
277 |
Q |
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|||||||||| |
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| T |
7617115 |
catttgtaac |
7617106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 366 - 586
Target Start/End: Complemental strand, 7615935 - 7615715
Alignment:
| Q |
366 |
aaaataattaccataggttgatgggctggttatgatgtcttgaaagataccataaacatttacataaatgaatcttgcatcaggaagttggttattgagt |
465 |
Q |
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||||||||||||| | | ||||||| || ||||||| |||||||| ||||||||| ||||||||| |||||||||||||| | ||| | || |||||| |
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| T |
7615935 |
aaaataattaccaaatgatgatgggttgtttatgatatcttgaaaaataccataagtatttacatagatgaatcttgcatccgtaagctcattgttgagt |
7615836 |
T |
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| Q |
466 |
tgatcaacaagagatcttaatccattgttgaataattgatttgcagaattgattcttgctacacatgttctaccatctgggctgttttgggccaatgcat |
565 |
Q |
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| T |
7615835 |
tgattaacaagagatttcaatccgttgttaaataattggtttgcagaatttattctttcaacacaagtggtaccatctggactgttttgagctaattcat |
7615736 |
T |
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| Q |
566 |
ttggggtgcaacctatttgac |
586 |
Q |
| |
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|||| ||||||||||||||| |
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| T |
7615735 |
ttggactgcaacctatttgac |
7615715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 3067843 - 3067896
Alignment:
| Q |
224 |
acatgtaatttgaccattgtttcttcctacaccacagcatccagcatttgtaac |
277 |
Q |
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|||| ||||||||||||| || |||||||| ||||| |||||| |||||||||| |
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| T |
3067843 |
acatataatttgaccatttttccttcctactccacaacatccaacatttgtaac |
3067896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 64 - 277
Target Start/End: Original strand, 36361409 - 36361622
Alignment:
| Q |
64 |
agagttgagctaagcgattaatatcaatagggtaagcatctgatgcggattgagcattgtaagctcttctaccaataatactatttccagcttcagttgg |
163 |
Q |
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|||| ||||||||| | ||||||||||||| |||||||| || ||||||||| |||||||||| | ||| || | |||||||||||||||||| |
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| T |
36361409 |
agagctgagctaagtggctaatatcaataggataagcatcatctggagattgagcactgtaagctctctgagcaacaacaacatttccagcttcagttgg |
36361508 |
T |
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| Q |
164 |
atgaaatgcatcccaaaataagaacccattcctatccctacatgcaggttgaaagggcaaacatgtaatttgaccattgtttcttcctacaccacagcat |
263 |
Q |
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| T |
36361509 |
atgaaaagcatcccaaaacaaatactctcttctgttctcacatggtgtttgcaatggtagacatgtaaattgaccattgtttcttcctactccacagcat |
36361608 |
T |
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| Q |
264 |
ccagcatttgtaac |
277 |
Q |
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|||||||||||||| |
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| T |
36361609 |
ccagcatttgtaac |
36361622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 224 - 277
Target Start/End: Complemental strand, 36648379 - 36648326
Alignment:
| Q |
224 |
acatgtaatttgaccattgtttcttcctacaccacagcatccagcatttgtaac |
277 |
Q |
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||||||||||||||||||||| |||||||| |||| ||||||| ||||| |||| |
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| T |
36648379 |
acatgtaatttgaccattgttccttcctactccacggcatccaacatttataac |
36648326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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