View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4561_high_2 (Length: 279)

Name: NF4561_high_2
Description: NF4561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4561_high_2
NF4561_high_2
[»] chr6 (4 HSPs)
chr6 (1-269)||(10498055-10498322)
chr6 (64-181)||(2285577-2285693)
chr6 (65-180)||(27176987-27177101)
chr6 (47-155)||(20772107-20772213)
[»] chr8 (2 HSPs)
chr8 (47-180)||(42456826-42456958)
chr8 (64-180)||(41581072-41581187)
[»] chr2 (5 HSPs)
chr2 (64-180)||(5357565-5357680)
chr2 (71-180)||(29923865-29923973)
chr2 (59-180)||(6069129-6069247)
chr2 (64-182)||(11915386-11915503)
chr2 (47-144)||(27249739-27249835)
[»] chr4 (3 HSPs)
chr4 (71-180)||(45073227-45073332)
chr4 (128-177)||(43148889-43148938)
chr4 (64-180)||(18489644-18489758)
[»] chr7 (1 HSPs)
chr7 (64-175)||(2729802-2729912)
[»] chr1 (3 HSPs)
chr1 (115-168)||(28651028-28651081)
chr1 (93-180)||(22023161-22023249)
chr1 (80-183)||(42787588-42787692)


Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 10498055 - 10498322
Alignment:
Q  1 aaaattatggagtgtcgtttatatcttttgtccaacctttgttgagtgaaaattgctctataaacttctaataaggttgaaacacattagaaaaaagatg 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||| |||||||||||| ||||||| || |    
T  10498055 aaaattatggagtgtcgtttatatcttttgtccaacctttcttgagtgaaaattgcaatataaacttctaataaagttgaaacacatcagaaaaa-gacg 10498153  T
Q  101 taaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaaatgaggttatattggtaaattattgaacaacatttgcttgct 200  Q
    ||||||| |||||||| |||| ||||| || ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10498154 taaatgttcatcgacagttaactgccaccgtttaaaattcatcgacagttaactgtaaatgaggttatattggtaaattactgaacaacatttgcttgct 10498253  T
Q  201 cttggttcccatacgccaaaattgtagaatccattgaattttactatgtcaaacttggtcgttcctatg 269  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  10498254 cttggttcccatacgccaaaattgttgaacccattgaattttactatgtcaaacttggtcgttcctatg 10498322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 2285577 - 2285693
Alignment:
Q  64 acttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaaatgag 163  Q
    ||||| || ||||||||||||||||||||||| || |||||||||||||  || |||| | |  ||||||||||| |||||| ||| ||||||  ||||     
T  2285577 acttcaaacaaggttgaaacacattagaaaaa-gacgtaaatgtccatcagcagttaactactgtcggttaaaattcatcgataatcaactgtcgatgaa 2285675  T
Q  164 gttatattggtaaattat 181  Q
    ||||||||| ||||||||    
T  2285676 gttatattgataaattat 2285693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 180
Target Start/End: Complemental strand, 27177101 - 27176987
Alignment:
Q  65 cttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaaatgagg 164  Q
    ||||||| ||| ||||||||||||||||||| || |||||||| |||||||| |||| ||||  || ||||||| |||||| | |||||||   ||||||    
T  27177101 cttctaacaagattgaaacacattagaaaaa-gacgtaaatgttcatcgacagttaactgccgccgattaaaattcatcgatagttaactgccgatgagg 27177003  T
Q  165 ttatattggtaaatta 180  Q
    |||||||  |||||||    
T  27177002 ttatattaataaatta 27176987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 155
Target Start/End: Complemental strand, 20772213 - 20772107
Alignment:
Q  47 tgaaaattgctctataaacttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgac 146  Q
    |||||||| || |||| |||| ||| ||||||||||||||  | |||||||| ||||||||  ||| ||| |||  ||||  ||||||||||||||||||    
T  20772213 tgaaaatttctgtatacacttttaacaaggttgaaacacacca-aaaaaagacgtaaatgttaatctacagttatctgccg-cggttaaaatccatcgac 20772116  T
Q  147 aattaactg 155  Q
    |||||||||    
T  20772115 aattaactg 20772107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 180
Target Start/End: Original strand, 42456826 - 42456958
Alignment:
Q  47 tgaaaattgctctataaacttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgac 146  Q
    ||||||||||| |||| |||||||| |||| ||||| |||| ||||||| || |||| ||||||||||||||||| | || |||||||||||||||| ||    
T  42456826 tgaaaattgctgtatacacttctaacaaggctgaaatacatcagaaaaa-gacgtaattgtccatcgacaattaactaccgtcggttaaaatccatcaac 42456924  T
Q  147 aattaactgtaaatgaggttatattggtaaatta 180  Q
    |  ||| |    ||||||||||||||||||||||    
T  42456925 agctaattaccgatgaggttatattggtaaatta 42456958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 41581187 - 41581072
Alignment:
Q  64 acttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaaatgag 163  Q
    ||||| || |||| ||||||||| |||||||| || ||||||||||||||||| |||| || | | | ||||||| |||||  | ||||||||  ||||     
T  41581187 acttcaaacaaggctgaaacacactagaaaaa-gacgtaaatgtccatcgacagttaagtgtcgtagattaaaattcatcggtagttaactgttgatgaa 41581089  T
Q  164 gttatattggtaaatta 180  Q
    ||||||||| |||||||    
T  41581088 gttatattgataaatta 41581072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 180
Target Start/End: Original strand, 5357565 - 5357680
Alignment:
Q  64 acttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaaatgag 163  Q
    |||||||| |||| ||||||||| |||||||| || ||||||||||||||||| |||| ||    |||||||| |||||||||| |||||||   |||||    
T  5357565 acttctaacaaggctgaaacacactagaaaaa-gacgtaaatgtccatcgacagttaactgttgccggttaaattccatcgacagttaactgccgatgag 5357663  T
Q  164 gttatattggtaaatta 180  Q
    |||||||||||||||||    
T  5357664 gttatattggtaaatta 5357680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 180
Target Start/End: Original strand, 29923865 - 29923973
Alignment:
Q  71 ataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaaatgaggttatat 170  Q
    |||||| |||||||||  ||||||| ||  |||||||  ||||||| |||| ||||  |||||||||||||||  ||||||||||   ||||||||||||    
T  29923865 ataaggctgaaacacaacagaaaaa-gacataaatgtttatcgacagttaactgccgccggttaaaatccatcagcaattaactgccgatgaggttatat 29923963  T
Q  171 tggtaaatta 180  Q
    | ||||||||    
T  29923964 tagtaaatta 29923973  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 180
Target Start/End: Original strand, 6069129 - 6069247
Alignment:
Q  59 tataaacttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaa 158  Q
    |||| |||||||| |||| |||||||||    |||||| |||||||| |  |||| || |||||| || ||||||||||| ||||| || ||||||||      
T  6069129 tatatacttctaagaaggctgaaacacac---aaaaaaaatgtaaatttttatcggcagttaattaccgtcggttaaaattcatcggcagttaactgtcg 6069225  T
Q  159 atgaggttatattggtaaatta 180  Q
    ||||| |||||||| |||||||    
T  6069226 atgagattatattgataaatta 6069247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 11915386 - 11915503
Alignment:
Q  64 acttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaaatgag 163  Q
    |||||||| |||  |||||||||  |||||||| |||||||||| |||||||| |||| | |   ||||||||||||||| || ||||||||  ||| ||    
T  11915386 acttctaacaagactgaaacacaccagaaaaaa-atgtaaatgttcatcgacagttaactactgccggttaaaatccatcaacgattaactgccaataag 11915484  T
Q  164 gttatattggtaaattatt 182  Q
     |||||||  |||||||||    
T  11915485 attatatttataaattatt 11915503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 27249739 - 27249835
Alignment:
Q  47 tgaaaattgctctataaacttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcg 144  Q
    ||||||||| | |||| ||||| || |||| |||||||||   ||||| |||||||||||||||||| || |||| ||||  | ||||||||||||||    
T  27249739 tgaaaattgttgtatacacttcaaacaaggctgaaacacaccggaaaa-agatgtaaatgtccatcggcagttaactgccgcctgttaaaatccatcg 27249835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 180
Target Start/End: Complemental strand, 45073332 - 45073227
Alignment:
Q  71 ataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaaatgaggttatat 170  Q
    |||||||||||||||| |||||||| ||||||||||||||||| || |||| ||||  ||||||||||||||||    ||||||||  || |||||||||    
T  45073332 ataaggttgaaacacactagaaaaa-gatgtaaatgtccatcggcagttaactgccgccggttaaaatccatcg---gttaactgtcgataaggttatat 45073237  T
Q  171 tggtaaatta 180  Q
    ||||||||||    
T  45073236 tggtaaatta 45073227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 43148938 - 43148889
Alignment:
Q  128 tcggttaaaatccatcgacaattaactgtaaatgaggttatattggtaaa 177  Q
    |||||| |||||||||||||||||||||   |||||||||||||||||||    
T  43148938 tcggttgaaatccatcgacaattaactgccgatgaggttatattggtaaa 43148889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 18489758 - 18489644
Alignment:
Q  64 acttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaaatgag 163  Q
    |||||||| |||||||||| |||  ||||||| ||  |||||||| ||| ||| |||| |||| ||||||||||||||||  || |||||||   ||||     
T  18489758 acttctaacaaggttgaaatacaccagaaaaa-gacataaatgtctatc-acagttaactgccgtcggttaaaatccatcagcagttaactgccgatgaa 18489661  T
Q  164 gttatattggtaaatta 180  Q
     ||||||||||||||||    
T  18489660 attatattggtaaatta 18489644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 175
Target Start/End: Original strand, 2729802 - 2729912
Alignment:
Q  64 acttctaataaggttgaaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgacaattaactgtaaatgag 163  Q
    |||||||| |||| |||||||||  ||||||| || |||||||||||||| || |||| ||||| | ||||||||||||||| | ||||| ||  |||||    
T  2729802 acttctaacaaggctgaaacacaacagaaaaa-gacgtaaatgtccatcggcagttaactgccaccagttaaaatccatcgatagttaacagtcgatgag 2729900  T
Q  164 gttatattggta 175  Q
    ||||||||||||    
T  2729901 gttatattggta 2729912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 28651028 - 28651081
Alignment:
Q  115 caattaattgccatcggttaaaatccatcgacaattaactgtaaatgaggttat 168  Q
    ||||||||| || ||||||||||||||||| || |||||||| |||||| ||||    
T  28651028 caattaattaccgtcggttaaaatccatcggcagttaactgtcaatgagattat 28651081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 22023249 - 22023161
Alignment:
Q  93 aaaagatgtaaatgtccatcgacaattaattgccatcggttaaaa-tccatcgacaattaactgtaaatgaggttatattggtaaatta 180  Q
    |||||| |||| ||||| |||||| |||| || | |||||||||| ||||||| || |||||||   |||||||||||| |||||||||    
T  22023249 aaaagacgtaattgtccgtcgacagttaactgtcgtcggttaaaaatccatcggcagttaactgccgatgaggttatataggtaaatta 22023161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 42787692 - 42787588
Alignment:
Q  80 aaacacattagaaaaaagatgtaaatgtccatcgacaattaattgccatcggttaaaatccatcgaca-attaactgtaaatgaggttatattggtaaat 178  Q
    |||||||  |||||||| | |||||| |  ||| ||| ||||||||| ||||||||||||||||| ||  |||||||   || ||||||||||| |||||    
T  42787692 aaacacaccagaaaaaaaacgtaaatatgtatcaacagttaattgccgtcggttaaaatccatcggcatgttaactgccgataaggttatattgataaat 42787593  T
Q  179 tattg 183  Q
    |||||    
T  42787592 tattg 42787588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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