View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4561_high_3 (Length: 275)
Name: NF4561_high_3
Description: NF4561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4561_high_3 |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 49059625 - 49059690
Alignment:
| Q |
129 |
gttatgtgatcctttcctccaaattaattattctttcttgcaatatcaataataatttatttttat |
194 |
Q |
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| T |
49059625 |
gttatgtgatcctttcctccaaattaattattctttcttgcaatatcaataataatttatttttat |
49059690 |
T |
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Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 49059509 - 49059580
Alignment:
| Q |
18 |
aaatgtttgttaaagagtgaaccagacaagataatgtaatttgtctttataacctatacgattgctttgatg |
89 |
Q |
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| T |
49059509 |
aaatgtttggtaaagagtgaaccagacatgataatgtaatttgtctttataacctatacgattgctttgatg |
49059580 |
T |
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Target: scaffold0121 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 33528 - 33556
Alignment:
| Q |
210 |
gcttaaatgtgttttttgtctatctattt |
238 |
Q |
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| T |
33528 |
gcttaaatgtgttttttgtctatctattt |
33556 |
T |
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