View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4561_high_4 (Length: 271)
Name: NF4561_high_4
Description: NF4561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4561_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 53424535 - 53424378
Alignment:
| Q |
18 |
gcaagaaattatgatttcccagcaaccgtggtaagaacaaaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagttttt |
117 |
Q |
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| T |
53424535 |
gcaagaaattatgacttcccagcaaccgtggtaagaacaagagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagttttt |
53424436 |
T |
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| Q |
118 |
taatttaatttacggtatatcaagaagattaatggatatacaccatcaatataaagtt |
175 |
Q |
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| T |
53424435 |
taatttaatttacggtatatcaagaagattaatggatatacaccatcaatataaagtt |
53424378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 53424158 - 53424066
Alignment:
| Q |
166 |
atataaagttattttacactcacattcaatcagaactattcaatttgtgattggttttcaatgtaatccaattttacactttgagttcatctc |
258 |
Q |
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| T |
53424158 |
atataaagttattttacactcacattcaattagaactattcaatttgtgattggttttcaatgtaatccaattttacactttgagttcatctc |
53424066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 48374048 - 48374134
Alignment:
| Q |
33 |
ttcccagcaaccgtggtaagaacaaaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcattttaaagtttttta |
119 |
Q |
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| T |
48374048 |
ttcccagcaacagtggtaagatcaaaagatgttgtcacactcctcaaatatgtcaattcaacgaggtaagcattttaaaggttttta |
48374134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 53431666 - 53431594
Alignment:
| Q |
33 |
ttcccagcaaccgtggtaagaacaaaagatgctgccacaatcctccaatatgtcaattcaacaaggtatgcat |
105 |
Q |
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| T |
53431666 |
ttcccagcaacagtggtaagatcaaaagatgttgccacactcctccaatacgccaattcaacaaggtatgcat |
53431594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 53308955 - 53308910
Alignment:
| Q |
70 |
caatcctccaatatgtcaattcaacaaggtatgcattttaaagttt |
115 |
Q |
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| T |
53308955 |
caatactccaatatgtcaattcaacaaggtaagcattataaagttt |
53308910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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