View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4561_high_5 (Length: 260)
Name: NF4561_high_5
Description: NF4561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4561_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 9e-79; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 94 - 250
Target Start/End: Original strand, 1193035 - 1193191
Alignment:
| Q |
94 |
cataatccttctttaatgattccaaacaaaatctgatttttctccctttcatttatggaaaataattactttctcctctcttcctgcacgttttaatttt |
193 |
Q |
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| T |
1193035 |
cataatccttctttaatgattccaaacaaaatctgatttttctccctttcatttaaggaaaataattactttctcctctcttcctgcacgttttaatttt |
1193134 |
T |
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| Q |
194 |
acaaacattatcaaggaaagctcttgaatgttgttattccattaccatgcatctctg |
250 |
Q |
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| T |
1193135 |
acaaacattatcaaggaaagctcttcaatgttgttattccattaccatgcatctctg |
1193191 |
T |
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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 1192959 - 1193007
Alignment:
| Q |
51 |
aaacacatatatataacagtataacacgccatattccctctctcataat |
99 |
Q |
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| T |
1192959 |
aaacacatatatataacagtataacacgccatattccctctctcataat |
1193007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 1192860 - 1192910
Alignment:
| Q |
1 |
gatttccactactcctttatttccatatctctctcccctggtatgtttcaa |
51 |
Q |
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| T |
1192860 |
gatttccactactcctttatttccattactctctcccctggtatgtttcaa |
1192910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 17543506 - 17543424
Alignment:
| Q |
94 |
cataatccttctttaatgattccaaacaaaatctgatttttctccctttcatttatggaaaataattactttctcctctcttcctg |
179 |
Q |
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| T |
17543506 |
cataatccttctttaatgcttccaaacagaatctgattttt---tctctcatttaaggaaaagaattactttcttctctcttcctg |
17543424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 52016309 - 52016353
Alignment:
| Q |
94 |
cataatccttctttaatgattccaaacaaaatctgatttttctcc |
138 |
Q |
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| T |
52016309 |
cataatcattccttaatgattccaaacaaaatctgattttcctcc |
52016353 |
T |
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