View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4561_low_1 (Length: 444)
Name: NF4561_low_1
Description: NF4561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4561_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 438
Target Start/End: Complemental strand, 4470631 - 4470210
Alignment:
| Q |
17 |
tgtacaacacgataacttaattgaagtctgataacattgtaattttaaattgtaggactgtagaatagtaatggtttactactttcttcattcttgacat |
116 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4470631 |
tgtacaacatgacaacttaattgaagtctgataacattgtaattgtaaattgtaggactgtagaatagtaatggtttactactttcttcattctttacat |
4470532 |
T |
|
| Q |
117 |
gtatttccatgattnnnnnnnngttatatatcttaaccaatcatgaacaacaatattaatccacttgttatttccattatcatgattaccagtgactata |
216 |
Q |
| |
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||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4470531 |
gtacttccatgattaaaagaaagttatatatcttaaccaatcatgaacaacaatattaatccacttgttatttccattatcatgattaccagtagctata |
4470432 |
T |
|
| Q |
217 |
ggattcattgatgaataagaattcctaatgaaccacttcagtagctatgacattacgtgatagtatatacataaagaaattgacagaactaaatttgtga |
316 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||| || ||||||||||||||||||||| |||||||||||||| |
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| T |
4470431 |
ggattcactgatgaataagaattcctaatgaaccactccaatagctatggcattacgtgacaggatatacataaagaaattgacataactaaatttgtga |
4470332 |
T |
|
| Q |
317 |
tttaagaacatgaaataaagcacaatattgtcacaattattctatatttaatgaattgactatttatgtaatctttaatgattgattttctagtttagaa |
416 |
Q |
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|
||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4470331 |
tttaagaacatgaaataaagcacaatattatcacagttaatctatatttaatgaattgactatttatgtaatctttaatgattgattttctagtttagaa |
4470232 |
T |
|
| Q |
417 |
gtcgttattctacatttaattt |
438 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
4470231 |
gtcgttattctacatttaattt |
4470210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 314
Target Start/End: Complemental strand, 26556348 - 26556054
Alignment:
| Q |
17 |
tgtacaacacgataacttaattgaagtctgataacattgtaattttaaattgtaggactgtagaatagtaatggtttactactttcttcattcttgacat |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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|
| T |
26556348 |
tgtacaacacgataacttaatt-aagtctgataacattgtaattgtaaattgtaggactgtagaatagtaatggtttactactttcttcattcattgcat |
26556250 |
T |
|
| Q |
117 |
gtatttccatgattnnnnnnnngttatatatcttaaccaatcatgaacaacaatattaatccacttgttatttccattatcatgattaccagtgactata |
216 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
26556249 |
gtatttccatgattaaaaaa--gttatatatcttaaccaatcatgaacaacaatattaatccacttgttatttccattatcttgattaccagtagctata |
26556152 |
T |
|
| Q |
217 |
ggattcattgatgaataagaattcctaatgaaccacttcagtagctatgacattacgtgatagtatatacataaagaaattgacagaactaaatttgt |
314 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||| ||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
26556151 |
ggattcactgatgaataagaattcctaatgaaccactccagcagctatggctttacgtgacagtatatacataaagaaattgacagaattaaatttgt |
26556054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 17 - 359
Target Start/End: Complemental strand, 7138332 - 7138000
Alignment:
| Q |
17 |
tgtacaacacgataacttaattgaagtctgataacattgtaattttaaattgtaggactgtagaatagtaatggtttactactttcttcattcttgacat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||| |
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|
| T |
7138332 |
tgtacaacacgataacttaattgaagtctgataacattgtaattgtaaattgtaggactgtac--------tggtttactactttcttcattctttgcat |
7138241 |
T |
|
| Q |
117 |
gtatttccatgattnnnnnnnngttatatatcttaaccaatcatgaacaacaatattaatccacttgttatttccattatcatgattaccagtgactata |
216 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
7138240 |
gtatttccatgattaaaaaaa-gttatatatcttaaccaatcatgaacaacaatattaatccacttgttatttccattatcatgattaccagtagctgta |
7138142 |
T |
|
| Q |
217 |
ggattcattgatgaataagaattcctaatgaaccacttcagtagctatgacattacgtgatagtatatacataaagaaattgacagaactaaatttgtga |
316 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||| || | ||| |||| ||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
7138141 |
ggattcactgatgaataagaattcctaatgaaccactccagtagctgtggctttatgtgacagtatatacataaagaaattgacagaact-aatttgtga |
7138043 |
T |
|
| Q |
317 |
tttaagaacatgaaataaagcacaatattgtcacaattattct |
359 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
7138042 |
tttgagaacatgaaataaagcacaatactgtcacaattattct |
7138000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 388 - 438
Target Start/End: Complemental strand, 7138002 - 7137952
Alignment:
| Q |
388 |
tctttaatgattgattttctagtttagaagtcgttattctacatttaattt |
438 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
7138002 |
tctttaatgattgattttctggtttagaagttgttattctacatttaattt |
7137952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 4698953 - 4698897
Alignment:
| Q |
381 |
tatgtaatctttaatgattgattttctagtttagaagtcgttattctacatttaatt |
437 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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|
| T |
4698953 |
tatgtaatctttaatgattgaatttctggtttagaagtcgttattctacatttaatt |
4698897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 165 - 253
Target Start/End: Complemental strand, 25337634 - 25337535
Alignment:
| Q |
165 |
aacaatattaatccacttgttatttccattatcatgattacca-----------gtgactataggattcattgatgaataagaattcctaatgaaccact |
253 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||| || | ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25337634 |
aacaatattaatccacttgttgtttccattatcatgattaccaagacactaccagtaattataggattcactgatgaataagaattcctaatgaaccact |
25337535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 428
Target Start/End: Original strand, 12746621 - 12746668
Alignment:
| Q |
381 |
tatgtaatctttaatgattgattttctagtttagaagtcgttattcta |
428 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
12746621 |
tatgtaatctttaatgattgaatttctggtttagaagtcgttattcta |
12746668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 428
Target Start/End: Original strand, 12757611 - 12757658
Alignment:
| Q |
381 |
tatgtaatctttaatgattgattttctagtttagaagtcgttattcta |
428 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
12757611 |
tatgtaatctttaatgattgaatttctggtttagaagtcgttattcta |
12757658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 33984045 - 33984086
Alignment:
| Q |
366 |
aatgaattgactatttatgtaatctttaatgattgattttct |
407 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
33984045 |
aatgaatttactatttatgtaatctttaatgattgattttct |
33984086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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