View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4561_low_2 (Length: 342)
Name: NF4561_low_2
Description: NF4561
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4561_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 335
Target Start/End: Original strand, 5887334 - 5887652
Alignment:
| Q |
16 |
catgatatataaatgaacataaaatacgaa--tttattaatttagagaactatagtattgtataagatatgtttaataagannnnnnnnnnagggaacta |
113 |
Q |
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| T |
5887334 |
catgatatataaatgatcataaaataagaaaatttattaatttagagaactatagtattgtataagatatgtttaacaagatttttttt--agggaacta |
5887431 |
T |
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| Q |
114 |
tatacttaatgaaataataaagcacacttnnnnnnnnngtatagtggttaagaannnnnnncagtaccagcaagttttgggacagagctccagcagcaat |
213 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
5887432 |
tatacttaatgaaatagtaaagcacacttaaaaaaaa-gtatagtggttaagaatttttttcagtaccagcaagttttggtacagagctccagcagcaat |
5887530 |
T |
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| Q |
214 |
cttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcctctgttgaccttctccttgttacagcaagagtgatgtcc |
313 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5887531 |
cttgtccataagttgtgatgtatttgatgagcttttcatcttcttcaggtgaccatagtcctctgttgaccttctccttgttacagcaagagtgatgtcc |
5887630 |
T |
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| Q |
314 |
catgattgatgtcttgtttctt |
335 |
Q |
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|||||||||||||||||||||| |
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| T |
5887631 |
catgattgatgtcttgtttctt |
5887652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 5843308 - 5843464
Alignment:
| Q |
176 |
agtaccagcaagttttgggacagagctccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcct |
275 |
Q |
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| T |
5843308 |
agtaccagcaagttttgggacagaactccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcct |
5843407 |
T |
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| Q |
276 |
ctgttgaccttctccttgttacagcaagagtgatgtcccatgattgatgtcttgttt |
332 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
5843408 |
ctgttgaccttctccttgctacagcaagagtgatgtgccatgattgatgtcttgttt |
5843464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 5850050 - 5850206
Alignment:
| Q |
176 |
agtaccagcaagttttgggacagagctccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcct |
275 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5850050 |
agtaccagcaagttttgggacagaactccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcct |
5850149 |
T |
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| Q |
276 |
ctgttgaccttctccttgttacagcaagagtgatgtcccatgattgatgtcttgttt |
332 |
Q |
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| T |
5850150 |
ctgttgaccttctccttgctacagcaagagtgatgtgccatgattgatgtcttgttt |
5850206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 178 - 319
Target Start/End: Original strand, 5921386 - 5921524
Alignment:
| Q |
178 |
taccagcaagttttgggacagagctccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcctct |
277 |
Q |
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|||||||||||||||| ||||| ||||| || | || ||||||| ||||| || ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5921386 |
taccagcaagttttggaacagaactccaacaaccat---gtccatatgttgtaatatatttgatgagtttttcatcttcttcaggtgaccataatcctct |
5921482 |
T |
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| Q |
278 |
gttgaccttctccttgttacagcaagagtgatgtcccatgat |
319 |
Q |
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| T |
5921483 |
tttaaccttctgtttgttgcaacaagagtgatgtcccatgat |
5921524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 178 - 319
Target Start/End: Original strand, 5984806 - 5984944
Alignment:
| Q |
178 |
taccagcaagttttgggacagagctccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcctct |
277 |
Q |
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|||||||||||||||| ||||| ||||| || | || ||||||| ||||| || ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5984806 |
taccagcaagttttggaacagaactccaacaaccat---gtccatatgttgtaatatatttgatgagtttttcatcttcttcaggtgaccataatcctct |
5984902 |
T |
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| Q |
278 |
gttgaccttctccttgttacagcaagagtgatgtcccatgat |
319 |
Q |
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| T |
5984903 |
tttaaccttctgtttgttgcaacaagagtgatgtcccatgat |
5984944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 178 - 319
Target Start/End: Original strand, 5949278 - 5949416
Alignment:
| Q |
178 |
taccagcaagttttgggacagagctccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcctct |
277 |
Q |
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|||||||||||||||| ||||| ||||| || | || ||||||| ||||| | ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5949278 |
taccagcaagttttggaacagaactccaacaaccat---gtccatatgttgtactatatttgatgagtttttcatcttcttcaggtgaccataatcctct |
5949374 |
T |
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| Q |
278 |
gttgaccttctccttgttacagcaagagtgatgtcccatgat |
319 |
Q |
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|| ||||||| ||||| || |||||||||||||||||||| |
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| T |
5949375 |
tttaaccttctgtttgttgcaacaagagtgatgtcccatgat |
5949416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 319
Target Start/End: Original strand, 5960544 - 5960682
Alignment:
| Q |
178 |
taccagcaagttttgggacagagctccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcctct |
277 |
Q |
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|||||||||||||||| ||||| ||||| || | || ||||||| ||||| || ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5960544 |
taccagcaagttttggaacagaactccaacaaccat---gtccatatgttgtaatatatttgatgagtttttcatcttcttcaggtgaccataatcctct |
5960640 |
T |
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| Q |
278 |
gttgaccttctccttgttacagcaagagtgatgtcccatgat |
319 |
Q |
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| T |
5960641 |
tttaaccttctgtttgttgcaacaagaatgatgtctcatgat |
5960682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 41351576 - 41351626
Alignment:
| Q |
238 |
tgatgagtttttcatcttcttcaggtgaccatagtcctctgttgaccttct |
288 |
Q |
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||||||||||||||||||||||||| ||||| || ||||| || ||||||| |
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| T |
41351576 |
tgatgagtttttcatcttcttcaggggaccaaagacctctcttaaccttct |
41351626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 216 - 321
Target Start/End: Original strand, 42789098 - 42789203
Alignment:
| Q |
216 |
tgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcctctgttgaccttctccttgttacagcaagagtgatgtccca |
315 |
Q |
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| T |
42789098 |
tgtccataattagtgatgtagttgatgagtttttcatcttcttctggtgaccatagtcctcttttcaccttctgtttattgcagcaagagtgatgcccca |
42789197 |
T |
|
| Q |
316 |
tgattg |
321 |
Q |
| |
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| |||| |
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|
| T |
42789198 |
ttattg |
42789203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 2590669 - 2590612
Alignment:
| Q |
231 |
atgtatttgatgagtttttcatcttcttcaggtgaccatagtcctctgttgaccttct |
288 |
Q |
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|||||| | |||||||| |||||||||||||||||||| || ||||| || ||||||| |
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| T |
2590669 |
atgtatctaatgagtttctcatcttcttcaggtgaccaaaggcctctcttaaccttct |
2590612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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