View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4563_high_1 (Length: 514)
Name: NF4563_high_1
Description: NF4563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4563_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 16 - 343
Target Start/End: Complemental strand, 21699577 - 21699269
Alignment:
| Q |
16 |
caccattctgataagataaccagtcaagctttgtttgctagttgagttttgggttaaatctgtattttaatatatatttgatttttctnnnnnnntaat- |
114 |
Q |
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| T |
21699577 |
caccattctgataagataaccagtcaagctttgtttgctagttgagttttgggttaaatctgtattttaatatatatttgatttttctaaaaaaaaaaac |
21699478 |
T |
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| Q |
115 |
atgataaatgatcgtataatattattcaatattaaaaacatttgacaatacgaaataataagtgtcacttgaaactcacacacagctgcgaggtcttagt |
214 |
Q |
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| T |
21699477 |
atgataaatgatcttataatattattcaatattaaaaacatttgacaatacgaaataataagtatcacttgaaactcacacaaagctgcgaggtc----- |
21699383 |
T |
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| Q |
215 |
ttcaaagcaggtgaagatgttcaacttaacaatatcgacagcgtatagtaaactgtaaatctctcccctcgaaagtatggtcatatattagaattgaaga |
314 |
Q |
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| T |
21699382 |
---------------gatgttcaacctaacaatatcgacagcgtatagtaaactgtaaacctctcccctccaaagtatggtcatatattagaattgaaga |
21699298 |
T |
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| Q |
315 |
acaagtaagattgtacattatgaatatgg |
343 |
Q |
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| T |
21699297 |
acaagtaagattgtacattatgaatatgg |
21699269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 392 - 452
Target Start/End: Complemental strand, 21699220 - 21699160
Alignment:
| Q |
392 |
ttgacatttgaggagacttaccggaactggaaaaagagaaatttaacggcggtggtggcgc |
452 |
Q |
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| T |
21699220 |
ttgacatttgaggagacttaccggaactggaaaaagagaaatttaacggcggtggtggcgc |
21699160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 477 - 514
Target Start/End: Complemental strand, 21699135 - 21699098
Alignment:
| Q |
477 |
ggaagcccttatctgcagttcacgcagttgatggatgc |
514 |
Q |
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| T |
21699135 |
ggaagcccttatctgcagttcacgcagttgatggatgc |
21699098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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