View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4564-Insertion-1 (Length: 1100)
Name: NF4564-Insertion-1
Description: NF4564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4564-Insertion-1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 795; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 795; E-Value: 0
Query Start/End: Original strand, 8 - 1033
Target Start/End: Complemental strand, 4359102 - 4358073
Alignment:
| Q |
8 |
tcatcaccaccatggtggctccacctcaagccgccgtaacgacacacgcctctctaccacaagggagtatgagttcagctgcagcaacaccccaagttac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| |
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| T |
4359102 |
tcatcaccaccatggtggctccacctcaagccgccgtaatgacacacgcctctctaccacaagggagtatgagttcagctgcagcaacacacccaactac |
4359003 |
T |
|
| Q |
108 |
aaatttgccctaaacaacaagcgtcataacttcttcacgtgtactcacgcgcctctcacacaagacgacgacattgtggccgttaatgcggttaaagctg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
4359002 |
aaatttgccctaaacaacaagcgtcataacttcttcacgtgtgctcacgcgcctctcacaaaagaagacgacattgtaaccgttaatgcggttaaagctg |
4358903 |
T |
|
| Q |
208 |
tgttggagagcatggtaaacaataatgaagtgattgtcgaggcttcaccggcacttcccggatttggacggactcctaaggcaaggcagttgagggtgac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
4358902 |
tgttggagagcatggtaaacaataatgaagtaattgtcgaagcttccccggcacttcccggatttggaaggactcctaaggcgcggcagttgagggtgac |
4358803 |
T |
|
| Q |
308 |
cgactcaccttttccgctacacgacactgacgccgacgccgaggtggacaaggctgctgatgcattcataaagaggttctactcgcagttgaggaaacaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
4358802 |
cgactcaccttttccgctacacgacactgacgccgacgccgaggtggacaaggctgccgatgcattcataaggaggttctactcgcagttgaggaaacaa |
4358703 |
T |
|
| Q |
408 |
gattgaatcttgtttcataattttgtttcttaacatttcttaatgttaattatgaattttggataatcttatgtctttgtggatgtaagagaggatgctt |
507 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4358702 |
gattgagtcttgtttcatagttttgtttcttaacatttcttaatgttaattatgaattttggataatcttatgtctttgtggatgtaagagaggatgctt |
4358603 |
T |
|
| Q |
508 |
gttatttatgttgaggacttaatatatttgtatgtttattaattgccttctattgcttacatatgaaaaataaaatgttattacaagtgtaattaatttg |
607 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4358602 |
gttatttatgttgaggactta--atatttgtatgtttattagttggcttctattgcttacatatgaaaaataaaatgttattacaagtgtaaataatttg |
4358505 |
T |
|
| Q |
608 |
atcccggtctttttcttcacttaatttcca---nnnnnnnnngtaacaaagatataataacgaagctaataaattttcatctatatagctatttcattag |
704 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4358504 |
atcccggtctttttcttcacttaatttccatttttattttttgtaacaaagatataatcacgaagctaataaattttcatctatatagctatttcattag |
4358405 |
T |
|
| Q |
705 |
tatnnnnnnnncaaactacatagccatttcgatttcttttatcataataatcatcgtcttggtcttcggcatcctagtaattttacagaatattaatact |
804 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4358404 |
tat-aaaaaaacaaactacatagccatttcgatttcttttatcataataatcatcgtcttggtcttcggcatcctagtaattttacagaatattaatact |
4358306 |
T |
|
| Q |
805 |
acaaacttaagtatatatgttgaataatagttctcgtnnnnnnntgttggataatacaatattactcttgaaaacatgaaaataaaatagacgggggttt |
904 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4358305 |
acaaacttaagtatatatgttgaataatagttctcgtaaaaaaatgttggataatacaatattactcttgaaaacatgaaaataaaatagacgggggttt |
4358206 |
T |
|
| Q |
905 |
gtgttaccttccattat-attgagatgagattattttc-agcatgaagttgtagtgacggatctatactatttctttagtttgaaaataggtaatattat |
1002 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
4358205 |
gtgttaccttccattataattgagatgagattattttcaagcatgaagttgtagtgacggatctatactatttctttagtttgaaaataggtaatattct |
4358106 |
T |
|
| Q |
1003 |
ggggaaat-aaattagagt-tagattcaaatca |
1033 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| |
|
|
| T |
4358105 |
ggggaaataaaattagagtcaagattcaaatca |
4358073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 8 - 448
Target Start/End: Original strand, 4353168 - 4353608
Alignment:
| Q |
8 |
tcatcaccaccatggtggctccacctcaagccgccgtaacgacacacgcctctctaccacaagggagtatgagttcagctgcagcaacaccccaagttac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| |
|
|
| T |
4353168 |
tcatcaccaccatggtggctccacctcaagccgccgtaatgacacacgcctctctaccacaagggagtatgagttcagctgcagcaacacacccaactac |
4353267 |
T |
|
| Q |
108 |
aaatttgccctaaacaacaagcgtcataacttcttcacgtgtactcacgcgcctctcacacaagacgacgacattgtggccgttaatgcggttaaagctg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
4353268 |
aaatttgccctaaacaacaagcgtcataacttcttcacgtgtgctcacgcgcctctcacaaaagaagacgacattgtaaccgttaatgcggttaaagctg |
4353367 |
T |
|
| Q |
208 |
tgttggagagcatggtaaacaataatgaagtgattgtcgaggcttcaccggcacttcccggatttggacggactcctaaggcaaggcagttgagggtgac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
4353368 |
tgttggagagcatggtaaacaataatgaagtaattgtcgaagcttccccggcacttcccggatttggaaggactcctaaggcgcggcagttgagggtgac |
4353467 |
T |
|
| Q |
308 |
cgactcaccttttccgctacacgacactgacgccgacgccgaggtggacaaggctgctgatgcattcataaagaggttctactcgcagttgaggaaacaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4353468 |
cgactcaccttttccgctacacgacactgacgccgacgccgaggtggacaaggctgccgatgcattcataaggaggttctactcgcagttgaggaaacaa |
4353567 |
T |
|
| Q |
408 |
gattgaatcttgtttcataattttgtttcttaacatttctt |
448 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
4353568 |
gattgagtcttgtttcatagttttgtttcttaacatttctt |
4353608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 4349782 - 4350083
Alignment:
| Q |
8 |
tcatcaccaccatggtggctccacctcaagccgccgtaacgacacacgcctctctaccacaagggagtatgagttcagctgcagcaacaccccaagttac |
107 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| |
|
|
| T |
4349782 |
tcatcaccaccacggtggctccacctcaagccgtcgtaacgacacacgcctctctaccacaagggagtatgagttcagctgtagcaacacccctaaatac |
4349881 |
T |
|
| Q |
108 |
aaatttgccctaaacaacaagcgtc---------ataacttcttcacgtgtactcacgcgcctctcacacaagacgacgacattgtggccgttaatgcgg |
198 |
Q |
| |
|
|||||| | | |||||||| || | | |||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
4349882 |
aaattttcatttaacaacaaacgccaccgcaacaaccacttcttcacgtgtgctcacgcgcctctcacacaagacgatgacattgttaccgttaatgcgg |
4349981 |
T |
|
| Q |
199 |
ttaaagctgtgttggagagcatggtaaacaataatgaagtgattgtcgaggcttcaccggcacttcccggatttggacggactcctaaggcaaggcagtt |
298 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||||||| ||||| | |||||||| |||| || ||||| | | |||| ||||||| | | |||||||| |
|
|
| T |
4349982 |
ttaaggctgtgttagagaaaatggtaaacaataatgaggtgataggtgaggcttccccggtgctccccggttctcgacgaactcctatgaccaggcagtt |
4350081 |
T |
|
| Q |
299 |
ga |
300 |
Q |
| |
|
|| |
|
|
| T |
4350082 |
ga |
4350083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 345 - 445
Target Start/End: Original strand, 4350113 - 4350213
Alignment:
| Q |
345 |
gccgaggtggacaaggctgctgatgcattcataaagaggttctactcgcagttgaggaaacaagattgaatcttgtttcataattttgtttcttaacatt |
444 |
Q |
| |
|
|||||||| ||||||||||| || ||||| ||||||||||| |||| |||||||| | || | ||| || | |||||||| ||||||||||||||||||| |
|
|
| T |
4350113 |
gccgaggtagacaaggctgccgaagcatttataaagaggttttacttgcagttgaagtaagaggatggagttttgtttcacaattttgtttcttaacatt |
4350212 |
T |
|
| Q |
445 |
t |
445 |
Q |
| |
|
| |
|
|
| T |
4350213 |
t |
4350213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 483 - 530
Target Start/End: Original strand, 4353612 - 4353659
Alignment:
| Q |
483 |
tttgtggatgtaagagaggatgcttgttatttatgttgaggacttaat |
530 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | ||||||||||||| |
|
|
| T |
4353612 |
tttgtggatgtaagagaggattcttgttattttttttgaggacttaat |
4353659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 558 - 635
Target Start/End: Original strand, 4353665 - 4353743
Alignment:
| Q |
558 |
tattgcttacatatgaaaaataaaa-tgttattacaagtgtaattaatttgatcccggtctttttcttcacttaatttc |
635 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| | ||| ||||||||||||||| | |||||| |||||| || ||||| |
|
|
| T |
4353665 |
tattgcttatatatgaaaaataaaaatgttataagaagggtaattaatttgatcgctgtctttctcttcagttgatttc |
4353743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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