View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4564-Insertion-2 (Length: 1026)
Name: NF4564-Insertion-2
Description: NF4564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4564-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 888; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 888; E-Value: 0
Query Start/End: Original strand, 10 - 936
Target Start/End: Complemental strand, 4161564 - 4160635
Alignment:
| Q |
10 |
tggcaccaccattctttataatgttgcttttaccaaaatgggaatattgttcctcaaagttattattatctctttgtgtatcaaacattcccctcatgct |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4161564 |
tggcaccaccattctttataatgttgcttttaccaaaatgggaatattgttcctcaaagttattattatctctttgtgtatcaaacattcccctcatgct |
4161465 |
T |
|
| Q |
110 |
catagcagcagtaacagcttcaaattgtgaatgtgaactctcactaccatacatcacatcatgcaaaagagaagaagattcttcaaagcaatcagaagtt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4161464 |
catagcagcagtaacagcttcaaattgtgaatgtgaactctcactaccatacatcacatcatgcaaaagagaagaagattcttcaaagcaatcagaagtt |
4161365 |
T |
|
| Q |
210 |
attgcagctttattcccataagaagccaaacaatgagaaaaaccagtagttcctatttcttcacgtgaaggcataaccattcctgaaggcacgtgagttt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4161364 |
attgcagctttattcccataagaagccaaacaatgagaaaaaccagtggttcctatttcttcacgtgaaggcataaccattcctgaaggcacgtgagttt |
4161265 |
T |
|
| Q |
310 |
gcattaagtggggtctacaaggttctgttttactcactgtcgttacacctatttgtgatgctttttgcagcaaagcagtggcagacatgtgaggagaagc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4161264 |
gcattaagtggggtctacaaggttctgttttactcactgtcgttacacctatttgtgatgctttttgcagcaaagcagtggcagacatgtgaggagaagc |
4161165 |
T |
|
| Q |
410 |
agtagttatattgttggagttgaaagaattattaggaaacaaagttgtagggttagggttttgaaaatggttcaaatgggctgggagtaaccataatgga |
509 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4161164 |
agtggttatattgttggagttgaaagaattattaggaaacaaagttgtagggttagggttttgaaaatggttcaaatgggttgggagtaaccataatgga |
4161065 |
T |
|
| Q |
510 |
atttctggtcttaaattgaagtcttgttccttttttagtgatagtggttgaaaaccatggctttgatgaaattgcgagtgagaagagaatagagggttca |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4161064 |
atttctggtcttaaattgaagtcttgttccttttttagtgatagtggttgaaaaccatggctttgatgaaattgggagtgagaagagaatagagggttca |
4160965 |
T |
|
| Q |
610 |
ctgctgaaattgatgcactctcttgtgataaaacgtcacagaaggctctgtgagtgatgaaactgtcccttctgcaatcaaaaataaatttaaagtatat |
709 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4160964 |
ctgctgaaattgatgcactctcctgtgataaaacgtcacagaaggctctgtgagtgatgaaactgtcccttctgcaatcaaaaataaatttaaagtatat |
4160865 |
T |
|
| Q |
710 |
acatcatattattatttaattaatctcaaatatttattgaaaaaatacatgcattatagtttgttacctgtaacgtacacatcaaacacaatatatgcat |
809 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4160864 |
acatcatattattatttaattaatctcaaatatttattgaaaaaatacatgcattatagtttgttacctgtaacgtacacatcaaacacaatatatgcat |
4160765 |
T |
|
| Q |
810 |
tatatttgaattcgagtactctc---aaactattcatcttagtttggataatgaaagattaccatatggacagttttgaatattgatttgtatgtcacat |
906 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4160764 |
tatatttgaattcgagtactctcaataaactattcatcttggtttggataatgaaagattaccatatggaccgttttgaatattgatttgtatgtcacat |
4160665 |
T |
|
| Q |
907 |
tctatgaactaaaaatactgtttaagcaca |
936 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
4160664 |
tctatgaactaaaaatactgtttaagcaca |
4160635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 645 - 687
Target Start/End: Original strand, 50786107 - 50786149
Alignment:
| Q |
645 |
tcacagaaggctctgtgagtgatgaaactgtcccttctgcaat |
687 |
Q |
| |
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|||||||||||||||||||| ||||||||||| || ||||||| |
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| T |
50786107 |
tcacagaaggctctgtgagttatgaaactgtctctcctgcaat |
50786149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 645 - 679
Target Start/End: Complemental strand, 42898952 - 42898918
Alignment:
| Q |
645 |
tcacagaaggctctgtgagtgatgaaactgtccct |
679 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| |
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| T |
42898952 |
tcacagaaggctctgtgagttatgaaactgtccct |
42898918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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