View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4564-Insertion-3 (Length: 951)
Name: NF4564-Insertion-3
Description: NF4564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4564-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 257 - 524
Target Start/End: Original strand, 1234823 - 1235090
Alignment:
| Q |
257 |
agaacaataaggagtactcaatccacgtaattacaatcatctagttcttatatttaagagaaagacgagggttcaaaagtcattcatacatatcatacaa |
356 |
Q |
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| T |
1234823 |
agaacaataaggagtactcaattcacgtaattacaatcatctagtcctaataattaaaa-aaagacgagggttcaaaagtcgttcatacatatcatacaa |
1234921 |
T |
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| Q |
357 |
gatt-atcttattcttctaacaaaaaatcatctccaagagatgactttaaaagccacttattagaaattatatttacatttgatatgatttattttagac |
455 |
Q |
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| T |
1234922 |
gatccatcttattcttctaacaaaaaatcatcttcaagagatgacttcaaaagccacttattagaaattatatttacatttgacatgatttattttagac |
1235021 |
T |
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| Q |
456 |
ataaaagtcacttttagaataaagttagaaaaatgagtcttgtaaataagttaaagttgtttgatgatc |
524 |
Q |
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| T |
1235022 |
ataaaagtcacttttagaataaagttagaaaaatgagtcttgtaaataagttaaagttggttgatgatc |
1235090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 687 - 951
Target Start/End: Original strand, 1235278 - 1235546
Alignment:
| Q |
687 |
tacaacatttcaaaatttgtaaatatattttaccagtaaaaacactctttaaagtggatttaaaaatataaagaaatagtttctttgtaacaaacat-aa |
785 |
Q |
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| T |
1235278 |
tacaacatttcaaaatttgtaaatatattttaccagtaaaaacactctttaaagtggatttaaaaatataaagaaatagtttctttgtaacaaacataaa |
1235377 |
T |
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| Q |
786 |
ttatg---aaattatttttaaatatattttctcaatgcatctatcatagggttttggtgagacaannnnnnngatcaagtgcacggcaaatgggagacat |
882 |
Q |
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| T |
1235378 |
ttatgttaaaattatttttaaatatattttctcaatgcatatatcatagggtttttgtgagtcaaaaaattatatcaagtacacggcaaatgggagacat |
1235477 |
T |
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| Q |
883 |
gcatgctttgttccttgaatacttcttatactctttgtattcatgtaacctttatttcgtaatattcga |
951 |
Q |
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| T |
1235478 |
gcatgctttgttccttgaatacttcttatactttttgtattcatgaaacctttatttcgtaatattcga |
1235546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 128 - 231
Target Start/End: Original strand, 1234657 - 1234761
Alignment:
| Q |
128 |
aaatttgattaatggggaaatattttgtggtcaaaggcgggg-ggaatacataaaaacttaggacaatttatcgttaaaggtttcatatatttccttaac |
226 |
Q |
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| T |
1234657 |
aaatttgattaatggggaaagatattgtggtcaaaggcgggggggaatacataaaaacttaggacaatttatcgttaaaggtttcatatattttcttaac |
1234756 |
T |
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| Q |
227 |
ggcaa |
231 |
Q |
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| T |
1234757 |
ggcaa |
1234761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 1234523 - 1234584
Alignment:
| Q |
7 |
attaatgaaaaagagacaaaatttgcgcgaaacacgttgagaaaatgatttgcagagagaat |
68 |
Q |
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| T |
1234523 |
attaatgaaaaagagacaaattttgcgcgaaacacgttgagaaaatgatttacagagagaat |
1234584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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