View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4564-Insertion-5 (Length: 408)
Name: NF4564-Insertion-5
Description: NF4564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4564-Insertion-5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 408
Target Start/End: Original strand, 45052067 - 45052463
Alignment:
| Q |
8 |
gtgcaaataacttaagtggaacctactgaaataacggagcatcgagcaccatgaaagaactatcatatatttagatccatcttatctctatcaaagattc |
107 |
Q |
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| T |
45052067 |
gtgcaaataacttaagtggaacctactcaagtaacggagcatcgagcaccatgaaagaactatcatatttttagatccatcttatctctatcaa-gattg |
45052165 |
T |
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| Q |
108 |
agcattgctctctcaataagaagtttgaaaactttacattcacttttctcctttcatcttcatcagggaacaaaacaatttctgaaacttttttctcttt |
207 |
Q |
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| T |
45052166 |
agcattgctctctcaataagaagtttgaaaactttacattcacttttctcctttcatcttcatcaaggaacaaaacaatttctgaaac-tttttctcttt |
45052264 |
T |
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| Q |
208 |
tctcaatgagctcaatgtcttgatgcgtagggactctctattagtatctttgcttagccattatgtactataattgctacnnnnnnnnnnnntatatcta |
307 |
Q |
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| T |
45052265 |
tcttaatgagctcaatgtcttgatgcgtagggactctctattagtatatttgcttagccattatgtactataattgctac--aaaaaaataatatatcta |
45052362 |
T |
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| Q |
308 |
taaatttatgtaatccaacataagaacgttagaaagcatctagcaaagactaaataa-cttggattttaagtatataatcaacattttcccaccaattat |
406 |
Q |
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| T |
45052363 |
taaatttatgtaatccaacataagaa-gttagaaagcatctagcaaagactaaataaccttggattttaagtatataatcaacattttcccaccaattat |
45052461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 281
Target Start/End: Original strand, 40697741 - 40697833
Alignment:
| Q |
187 |
ttctgaaacttttttctcttttctcaatgagctcaatgtcttgatgcgtagggactctctattagtatctttgcttagccattatgtactataat |
281 |
Q |
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| T |
40697741 |
ttctaaaacatttttctctttcctcagtgagttcaatgtcttcatgtgaaggga--ctctactagtatcttcacttagccattatgtattataat |
40697833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 15319583 - 15319528
Alignment:
| Q |
187 |
ttctgaaacttttttctcttttctcaatgagctcaatgtcttgatgcgtagggact |
242 |
Q |
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| T |
15319583 |
ttctgaaacatttttctctttccacagtgagctcaatgtcttgatgtggagggact |
15319528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 100
Target Start/End: Complemental strand, 9650572 - 9650481
Alignment:
| Q |
8 |
gtgcaaataacttaagtggaacctactgaaataacggagcatcgagcaccatgaaagaactatcatatatttagatccatcttatctctatca |
100 |
Q |
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| T |
9650572 |
gtgcaagtaacttaagtgcaaccttttgaagtaatggagc-tcgagcaccatgaaccaatcaccatgtttttggatccatcttatctctatca |
9650481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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