View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4564_high_2 (Length: 352)
Name: NF4564_high_2
Description: NF4564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4564_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 34 - 333
Target Start/End: Complemental strand, 23259964 - 23259655
Alignment:
| Q |
34 |
atgataattatttggtttataattttgattcagcttgattgttttta----------tgttgctcactttattggggttattatagcaatttaaattatc |
123 |
Q |
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| T |
23259964 |
atgataattatttgttttataattttgattcagcttgattgtttttaattgtttttatgttgatcactttattggggatatgatagcaatttaaattatc |
23259865 |
T |
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| Q |
124 |
atatgtagtatcaatgcttttgattgaagaccgtgtgtctacttacatcaacacgtgaatacattcgattaatttctttttaaaagttttatgtgttagt |
223 |
Q |
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| T |
23259864 |
atatgtagtatcaatgcttttgattgaagaccgtgtgtctacttacatcaacacgtgattacattcgattaatttctttttaaaagttttatgtgttagt |
23259765 |
T |
|
| Q |
224 |
gatatatctgatgtctatgtcgtaggttgaagttgttttgtgtttgtataacagaataaaagtcacttaaaagaaaaaccaattataaaaacatgatttt |
323 |
Q |
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| T |
23259764 |
gacatatctgatgtctatgtcgtaggttgaagttgttttgtgtttgtataacagaataaaagtcacttaaaagaaaaaccagttataaaaacatgatttt |
23259665 |
T |
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| Q |
324 |
ctgagaagct |
333 |
Q |
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|||||||||| |
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| T |
23259664 |
ctgagaagct |
23259655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 27543865 - 27543816
Alignment:
| Q |
71 |
attgtttttatgttgctcactttattggggttattatagcaatttaaatt |
120 |
Q |
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||||||||| ||||| |||||| || |||||||| ||||||||||||||| |
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| T |
27543865 |
attgtttttgtgttgatcacttaatcggggttatgatagcaatttaaatt |
27543816 |
T |
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