View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4564_low_1 (Length: 459)
Name: NF4564_low_1
Description: NF4564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4564_low_1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 5e-97; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 47 - 268
Target Start/End: Complemental strand, 4359552 - 4359321
Alignment:
| Q |
47 |
tacgtccatgattttttaaagtcacgtgacattttcatttagactacacaatctcacgtgagattcaactacaacctcttaactcttaaggcaacacaaa |
146 |
Q |
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| T |
4359552 |
tacgtccatgattttttatagtcacgtgacattttcatttaaactacacaatctcacgtgagattcaactacaacctcttaactcttaaggcaacacaaa |
4359453 |
T |
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| Q |
147 |
cccacccacccaagcactaaataataaaaccacgtttttctttctccc--ctttccc--------atatatatatagacccattacccttcctcctcaat |
236 |
Q |
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| T |
4359452 |
cccacccacccaagcactaaataataaaaccacgtttttctttctcccctctttcccatatatatatatatatatagacccattacccttcctcctcaat |
4359353 |
T |
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| Q |
237 |
tcatccctttctttgtgtttcaatatctctct |
268 |
Q |
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||| |||||||||||||||||||||||||||| |
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| T |
4359352 |
tcaaccctttctttgtgtttcaatatctctct |
4359321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 369 - 459
Target Start/End: Original strand, 4349627 - 4349717
Alignment:
| Q |
369 |
gtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatgg |
459 |
Q |
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| T |
4349627 |
gtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatgg |
4349717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 369 - 459
Target Start/End: Original strand, 4353014 - 4353104
Alignment:
| Q |
369 |
gtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatgg |
459 |
Q |
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| T |
4353014 |
gtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggtatatcaaagggaaaactaatgatgg |
4353104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 369 - 459
Target Start/End: Complemental strand, 4359257 - 4359167
Alignment:
| Q |
369 |
gtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatgg |
459 |
Q |
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| T |
4359257 |
gtaccaataattactaagagagtatggagtatgatacgtgtggccttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatgg |
4359167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 4352866 - 4352931
Alignment:
| Q |
204 |
atatatatagacccattacccttcctcctcaattcatccctttctttgtgtttcaatatctctctc |
269 |
Q |
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| T |
4352866 |
atatatatacacccatttcccttcctcttcaattcatccctttctttgtgtttcaatatctctctc |
4352931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 4349463 - 4349507
Alignment:
| Q |
202 |
atatatatatagacccattacccttcctcctcaattcatcccttt |
246 |
Q |
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| T |
4349463 |
atatatatatatacccatcacccttcctcttcaattcatcccttt |
4349507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 384 - 459
Target Start/End: Complemental strand, 43486230 - 43486155
Alignment:
| Q |
384 |
aagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatgg |
459 |
Q |
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| T |
43486230 |
aagagagtgtggagtatggtacgtgtagccttcttcatgttgagaaaaggcatttcaaagggaaaactgatgatgg |
43486155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 459
Target Start/End: Complemental strand, 43475611 - 43475536
Alignment:
| Q |
384 |
aagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatgg |
459 |
Q |
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| T |
43475611 |
aagaaagtgtggagtatggtacgtgtggccttcttcatgttgagaaaaggtatgtcaaagggcaaactaatgatgg |
43475536 |
T |
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