View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4564_low_2 (Length: 395)
Name: NF4564_low_2
Description: NF4564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4564_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 378
Target Start/End: Complemental strand, 35053504 - 35053137
Alignment:
| Q |
11 |
cagagaagccatgaaagtagtaatataagatatcaaacacagtagctggttgaacccaaagcaaagccgtcgggaggtgaaactcacgtgcggcttgtgc |
110 |
Q |
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| T |
35053504 |
cagagaagccatgaaagtagtaatataagatatcaaacacagtagctggttgaacccaaagcaaagccgtcgggaggtgaaactcacgtgcggcttctgc |
35053405 |
T |
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| Q |
111 |
ggcccattgaaggaggagggagtgaactaagcaagtgaaaggggtaccttcttgtgagtttttgagtatgatatctgtgacaaactctgagccgcggcgt |
210 |
Q |
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| T |
35053404 |
ggcccattgaaggaggagggagtgaactaagcaagtgaaaggggtaccttcttgtgagtttttgagtatgatatctgagacaaactctgagccgcggcgt |
35053305 |
T |
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| Q |
211 |
tgaaactctgcatggtattctaagtaagcatcgctgcctgtgcctttaaagccgtcgtcgtagccgtcggagaaggggtggtaggagaggttagggaggg |
310 |
Q |
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| T |
35053304 |
tgaaactctgcatggtattctaagtaagcatcgctgcctgtgcctttaaagccgtcgtcgtagccgtcggagaaggggtagtaggagaggttagggaggg |
35053205 |
T |
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| Q |
311 |
taggtttgttagtgatgcggttgtgcatgtgtacggtggtagagatggtgacatgtgcacctaaagtg |
378 |
Q |
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| T |
35053204 |
taggtttgttagtgatgcggttgtgcatgtgtacggtggtagagatggtgacatgtgcacctaaagtg |
35053137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 43 - 376
Target Start/End: Original strand, 35050231 - 35050564
Alignment:
| Q |
43 |
tcaaacacagtagctggttgaacccaaagcaaagccgtcgggaggtgaaactcacgtgcggcttgtgcggcccattgaaggaggagggagtgaactaagc |
142 |
Q |
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| T |
35050231 |
tcaaacacagtggctggttgaacccaaagcaacgctgtcgagaggtgaaactcacgcgctgtctttgcagcccattgaagtaagatggagtgaactaaaa |
35050330 |
T |
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| Q |
143 |
aagtgaaaggggtaccttcttgtgagtttttgagtatgatatctgtgacaaactctgagccgcggcgttgaaactctgcatg-gtattctaagtaagcat |
241 |
Q |
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||||||| || ||||||||||||||||||||||||||| || | ||| ||| || ||||||| ||| | |||| ||| ||| | ||||||| | |
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| T |
35050331 |
aagtgaagggtttaccttcttgtgagtttttgagtatgagatttttgataaattcagagccgcagcgcgtgagttctg-atgagtagtgtaagtaattct |
35050429 |
T |
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| Q |
242 |
cgctgcctgtgcctttaaagccgtcgtcgtagccgtcggagaaggggtggtaggagaggttagggagggtaggtttgttagtgatgcggttgtgcatgtg |
341 |
Q |
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| T |
35050430 |
cggtaccggtggctttgaagccgtcgtcgtagccatcagagaaggggaggtaggagaggttagggagggtgggtttgttggtgaggcggttgtgcatgtg |
35050529 |
T |
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| Q |
342 |
tacggtggtagagatggtgacatgtgcacctaaag |
376 |
Q |
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| T |
35050530 |
tagggtggtagagagagtaacgtgtgcacctaaag |
35050564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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