View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4567-Insertion-1 (Length: 1007)
Name: NF4567-Insertion-1
Description: NF4567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4567-Insertion-1 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 798; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 798; E-Value: 0
Query Start/End: Original strand, 8 - 1005
Target Start/End: Complemental strand, 26831615 - 26830625
Alignment:
| Q |
8 |
atcgcatggctaaaacagtttcatccattttccttctaaattgtgattatagtcatagttatggttacgtacactgcaagctttgatactacaataatac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
26831615 |
atcgcatggctaaaacagtttcatccattttccttctgaattgtgattatagtcatagttatggttacatacgctgcaagctttgatactacgataatac |
26831516 |
T |
|
| Q |
108 |
aaacaaatgtggctgatatgcggccacaattatagctgtgatgtcgttgtagaaaccattaattaagatgnnnnnnnatataaattatgtgcatgacaca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
26831515 |
aaacaaatgtggctgatatgcggccacaattatagctgtgatgtcattgtagaaaccattaattacgatgtttttt-atataaattatgtgcatgacaca |
26831417 |
T |
|
| Q |
208 |
gggactgcgggtgtatggagaatttcggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgccagtc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26831416 |
gggactgcgggtgtatggagaatttcggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgccagtc |
26831317 |
T |
|
| Q |
308 |
tcaaaggatggaaattcttatacctctccaatttgcaggttccattttcttaattcattctcaaaattagtcttatctcttaatcacatgttaccaaaat |
407 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26831316 |
tcaaaggatggaaattcttatacctctccgatttgcaggttcgattttcttaattcattctcaaaattagtcttatctcttaatcacatgttaccaaaat |
26831217 |
T |
|
| Q |
408 |
ttaatgtgagaagaagagtgttacattacattggttccatattaacatatggtgtgaattggtctataggttaaaaacgaattgccaagtacattaaaag |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26831216 |
ttaatgtgagaagaagagtgttacattacattggttccatattaacatatggtgtgaattggtctataggttaaaaacgaattgccaagtacattaaaag |
26831117 |
T |
|
| Q |
508 |
cctttaggtaccaacaacatcgatggtcatgtggaccagccaatcttttcagaaaaatggtaatggagattgtcacaaacaaggtaaggttgatttgatc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26831116 |
cctttaggtaccaacaacatcgatggtcatgtggaccagccaatcttttcagaaaaatggtaatggagattgtcacaaacaaggtaaggttgatttgatc |
26831017 |
T |
|
| Q |
608 |
ccttcaatacattagtcaaagttataatttaatactatgatctaaattcatgtgtttgtatttatattctgatcattgcagaaagtgtctttgtggaaga |
707 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26831016 |
ccttcaatacattagtc-aagttataatttaatactatgatctaaattcaggtgtttgtatatataatctgatcattgcagaaagtgtctttgtggaaga |
26830918 |
T |
|
| Q |
708 |
agatatatgttgtttacagnnnnnnnctttgttcggaagattgtggcccacatcaacacatttgttttctattgcattgtgttacctgcaactgttatgg |
807 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26830917 |
agatatatgttgtttacag-ttttttctttgttcggaagattgtggcccacatcaacacatttgttttctattgcattgtgttacctgcaactgttatgg |
26830819 |
T |
|
| Q |
808 |
tacctgaggttgtggtccctaaatggggagctgtttatatcccttccatcatcacccttttaaatgctgttggaactccaaggtannnnnnnnnnnnnnn |
907 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26830818 |
tacctgaggttgtggtccctaaatggggagctgtttatatcccttccatcatcacccttttaaatgctgttggaactccaaggtattttttttatttttt |
26830719 |
T |
|
| Q |
908 |
naactcaactctaccttaagcacgtacactcctctgattaggcgtgtcccgataatcggacacgtgttagtgtctgaacaccgatacttataattaca |
1005 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| ||||||| ||||||||| ||| ||| ||||||||||||| |
|
|
| T |
26830718 |
taactcaactctaccttaagcacggacactcctctgattaggcgtgtcccggt-atcgaacacgtg-tagtgtctg-aca-cgacacttataattaca |
26830625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 6e-89
Query Start/End: Original strand, 200 - 594
Target Start/End: Complemental strand, 26784720 - 26784309
Alignment:
| Q |
200 |
atgacacagggactgcgggtgtatggagaatttcggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacg |
299 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||| | | ||||| |
|
|
| T |
26784720 |
atgacatagggactgcgggtgtgtggagaatttcggcgttgaatgaagctggtgggtggaaagataggaccacagttgaagatatggatctatcagtacg |
26784621 |
T |
|
| Q |
300 |
tgccagtctcaaaggatggaaattcttatacctctccaatttgcaggttccattttcttaattcattctcaaaattagtcttatctcttaa--tcacatg |
397 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |||||||||||||| |||||||| | | || |
|
|
| T |
26784620 |
tgcaagtctcgaaggatggaaattcttatacctctccaatatacaggttccatttacttaattcaatctcaaaattagtcatatctctttacctggtatt |
26784521 |
T |
|
| Q |
398 |
ttaccaaaatttaatgtgagaagaagagtgttacattacattggttccatattaac------------------atatggtgtgaattggtctataggtt |
479 |
Q |
| |
|
|||||||| ||||||||| | |||||||||| ||||||||||| ||| ||||| ||||||| |||||| ||||||||||| |
|
|
| T |
26784520 |
ttaccaaattttaatgtg---acaagagtgttaaattacattggtctcattttaacatagatggttctcttgctatatggtatgaatttgtctataggtt |
26784424 |
T |
|
| Q |
480 |
aaaaacgaattgccaagtacattaaaagcctttaggtaccaacaacatcgatggtcatgtggaccagccaatcttttcagaaaaatggtaatggagattg |
579 |
Q |
| |
|
||||| |||||||| ||||| ||||| |||| ||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| | ||||||||| |
|
|
| T |
26784423 |
aaaaatgaattgcccagtactttaaatgcctatagataccaacaacatcgatggtcatgtggaccggccaatcttttcaggaaaatgattatggagattc |
26784324 |
T |
|
| Q |
580 |
tcacaaacaaggtaa |
594 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26784323 |
tcacaaacaaggtaa |
26784309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 200 - 361
Target Start/End: Complemental strand, 26791046 - 26790885
Alignment:
| Q |
200 |
atgacacagggactgcgggtgtatggagaatttcggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacg |
299 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26791046 |
atgacatagggactgctggtgtatggagaatttcggcgttgaatgaagcgggtggatggaaagatagaaccaccgtcgaagacatggatttggctgtacg |
26790947 |
T |
|
| Q |
300 |
tgccagtctcaaaggatggaaattcttatacctctccaatttgcaggttccattttcttaat |
361 |
Q |
| |
|
||| ||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
26790946 |
tgctagtctcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaat |
26790885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 470 - 891
Target Start/End: Complemental strand, 26817509 - 26817092
Alignment:
| Q |
470 |
tctataggttaaaaacgaattgccaagtacattaaaagcctttaggtaccaacaacatcgatggtcatgtggaccagccaatcttttcagaaaaatggta |
569 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || || | |||||||||||||||||||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
26817509 |
tctataggttaaaaatgaattgccaagtacatttaaggcttataggtaccaacaacatcgatggtcatgtgggccagccaatctctttagaaaaatggct |
26817410 |
T |
|
| Q |
570 |
atggagattgtcacaaacaaggtaaggttgatttgatccct--tcaatacattagtcaaagttataatttaatactatgatctaaattcatgtgtttgta |
667 |
Q |
| |
|
||||||||| | | || |||||||| || ||| |||| | | ||| || ||||| | ||||||||||| ||||||||||||||||| | | |
|
|
| T |
26817409 |
atggagattcttagaagcaaggtaa--ttattttaatccttgttgaattcactagtcga--ttataatttaact-tatgatctaaattcatgcatgtcct |
26817315 |
T |
|
| Q |
668 |
tttatattctgatcattgcagaaagtgtctttgtggaagaagatatatgttgtttacagnnnnnnnctttgttcggaagattgtggcccacatcaacaca |
767 |
Q |
| |
|
| | || | || |||||||||||||||||||||||||||| ||||| |||||| || |||||||| |||||||||| ||||| ||||| |
|
|
| T |
26817314 |
tgtttaatatgtctattgcagaaagtgtctttgtggaagaagttatatattgtttgca-attttttctttgttcaaaagattgtggtgcacatacacaca |
26817216 |
T |
|
| Q |
768 |
tttgttttctattgcattgtgttacctgcaactgttatggtacctgaggttgtggtccctaaatggggagctgtttatatcccttccatcatcacccttt |
867 |
Q |
| |
|
||||| ||||||||| || |||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
26817215 |
tttgtgttctattgcgttctgttacctgcaactgttatggtgcctgagattgtggtccctaaatggggaactgtttatgtcccttccatcatcacccttc |
26817116 |
T |
|
| Q |
868 |
taaatgctgttggaactccaaggt |
891 |
Q |
| |
|
|||| ||||||||||| ||||||| |
|
|
| T |
26817115 |
taaaagctgttggaacaccaaggt |
26817092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 681 - 891
Target Start/End: Complemental strand, 26790591 - 26790382
Alignment:
| Q |
681 |
cattgcagaaagtgtctttgtggaagaagatatatgttgtttacagnnnnnnnctttgttcggaagattgtggcccacatcaacacatttgttttctatt |
780 |
Q |
| |
|
||||||||||||||||||||| ||||||| || || |||||||||| |||| |||| |||||||||| ||| | |||||||||| ||||||| |
|
|
| T |
26790591 |
cattgcagaaagtgtctttgttgaagaagctacatattgtttacagtttttt-ctttattcgaaagattgtggtgcacgtacacacatttgtgttctatt |
26790493 |
T |
|
| Q |
781 |
gcattgtgttacctgcaactgttatggtacctgaggttgtggtccctaaatggggagctgtttatatcccttccatcatcacccttttaaatgctgttgg |
880 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| | || |||||||| |
|
|
| T |
26790492 |
gcatattgttacctgcaactgttatggttcctgaggttgtggtccctaaatggggaactgtttatgtcccttccatcatcacccttcttaaagctgttgg |
26790393 |
T |
|
| Q |
881 |
aactccaaggt |
891 |
Q |
| |
|
||| ||||||| |
|
|
| T |
26790392 |
aacaccaaggt |
26790382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 685 - 865
Target Start/End: Complemental strand, 26784219 - 26784040
Alignment:
| Q |
685 |
gcagaaagtgtctttgtggaagaagatatatgttgtttacagnnnnnnnctttgttcggaagattgtggcccacatcaacacatttgttttctattgcat |
784 |
Q |
| |
|
|||||||||||||||||||||||| | |||| | |||||||| |||||| ||||||||||||| ||||| ||||||||||| || |||||||| |
|
|
| T |
26784219 |
gcagaaagtgtctttgtggaagaaaacatatatggtttacagtttttt-ctttgtccggaagattgtggttcacataaacacatttgtgttatattgcat |
26784121 |
T |
|
| Q |
785 |
tgtgttacctgcaactgttatggtacctgaggttgtggtccctaaatggggagctgtttatatcccttccatcatcaccct |
865 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
26784120 |
tgtgttacctgcaactgttatggtgcctgagattgtggtccctaaatggggaactgtttatatccctaccatcatcaccct |
26784040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 472 - 594
Target Start/End: Complemental strand, 26790801 - 26790679
Alignment:
| Q |
472 |
tataggttaaaaacgaattgccaagtacattaaaagcctttaggtaccaacaacatcgatggtcatgtggaccagccaatcttttcagaaaaatggtaat |
571 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| |||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || || |
|
|
| T |
26790801 |
tataggttaaaaacgaattaccaagtactttaaaggcctataggtaccaacaacatcgatggtcatgtgggccagcaaatcttttcagaaaaattgttat |
26790702 |
T |
|
| Q |
572 |
ggagattgtcacaaacaaggtaa |
594 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
26790701 |
ggagattgtcacaagcaaggtaa |
26790679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 207 - 332
Target Start/End: Complemental strand, 26817746 - 26817621
Alignment:
| Q |
207 |
agggactgcgggtgtatggagaatttcggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgccagt |
306 |
Q |
| |
|
||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||||||| ||| |
|
|
| T |
26817746 |
agggactgctggtgtgtggagaatttcagcattgaatgaagctggtgggtggaaagataggaccacagttgaagatatggacctggctgtacgtgctagt |
26817647 |
T |
|
| Q |
307 |
ctcaaaggatggaaattcttatacct |
332 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
26817646 |
ctggaaggatggaaattcttatacct |
26817621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 925 - 1007
Target Start/End: Complemental strand, 37598945 - 37598866
Alignment:
| Q |
925 |
aagcacgtacactcctctgattaggcgtgtcccgataatcggacacgtgttagtgtctgaacaccgatacttataattacact |
1007 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| || ||||||||||| | ||||| | ||||||| ||||||||||||||| |
|
|
| T |
37598945 |
aagcacggacactcctcggattaggcgtgtccc-attgtcggacacgtg-tcgtgtccg-acaccgacacttataattacact |
37598866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 5e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 681 - 891
Target Start/End: Original strand, 41920374 - 41920583
Alignment:
| Q |
681 |
cattgcagaaagtgtctttgtggaagaagatatatgttgtttacagnnnnnnnctttgttcggaagattgtggcccacatcaacacatttgttttctatt |
780 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| ||||||| |||||||||||| | | || |||||||| || ||||| || |||| |
|
|
| T |
41920374 |
cattgcagaaagtgtccttgtggaagaagatacatgtaatttacagtttctt-ctttgttcggaaagtgatagcacacatcaatacgtttgtgttttatt |
41920472 |
T |
|
| Q |
781 |
gcattgtgttacctgcaactgttatggtacctgaggttgtggtccctaaatggggagctgtttatatcccttccatcatcacccttttaaatgctgttgg |
880 |
Q |
| |
|
||||||| |||||||||| ||| |||||||||| |||| ||||| |||||||||||||||||||| ||||| | ||||| ||| | ||||| ||||| |
|
|
| T |
41920473 |
gcattgttctacctgcaacagttttggtacctgaagttgcagtcccaaaatggggagctgtttatattccttcagttatcactcttcttaatgcagttgg |
41920572 |
T |
|
| Q |
881 |
aactccaaggt |
891 |
Q |
| |
|
||||||||||| |
|
|
| T |
41920573 |
aactccaaggt |
41920583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 207 - 330
Target Start/End: Original strand, 41919713 - 41919836
Alignment:
| Q |
207 |
agggactgcgggtgtatggagaatttcggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgccagt |
306 |
Q |
| |
|
|||||||||||| || ||||||||||||||| |||| || |||||||| ||||| ||||| ||||| || ||||| ||||| |||||||| | || ||| |
|
|
| T |
41919713 |
agggactgcgggagtgtggagaatttcggcgctgaacgaggctggtggatggaaggataggaccacagttgaagatatggacttggctgttagagctagt |
41919812 |
T |
|
| Q |
307 |
ctcaaaggatggaaattcttatac |
330 |
Q |
| |
|
|||||||| ||||| ||||||||| |
|
|
| T |
41919813 |
ctcaaagggtggaagttcttatac |
41919836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 475 - 595
Target Start/End: Original strand, 41920184 - 41920304
Alignment:
| Q |
475 |
aggttaaaaacgaattgccaagtacattaaaagcctttaggtaccaacaacatcgatggtcatgtggaccagccaatcttttcagaaaaatggtaatgga |
574 |
Q |
| |
|
|||||||||| ||| |||| ||||| || || |||| | |||||||| ||||| ||||| ||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
41920184 |
aggttaaaaatgaactgccgagtactttcaaggcctaccgttaccaacagcatcgttggtcttgtggaccagccaatcttttccgaaaaatggtcttgga |
41920283 |
T |
|
| Q |
575 |
gattgtcacaaacaaggtaag |
595 |
Q |
| |
|
|||| | | |||||||||||| |
|
|
| T |
41920284 |
gattattagaaacaaggtaag |
41920304 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 925 - 1007
Target Start/End: Original strand, 21191001 - 21191080
Alignment:
| Q |
925 |
aagcacgtacactcctctgattaggcgtgtcccgataatcggacacgtgttagtgtctgaacaccgatacttataattacact |
1007 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||| | ||||||||||||| ||||| | ||||||| |||| |||||||||| |
|
|
| T |
21191001 |
aagcacggacactcctcggattaggcgtgtcccg-gagtcggacacgtgtt-gtgtccg-acaccgacacttgtaattacact |
21191080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 925 - 958
Target Start/End: Original strand, 19820333 - 19820366
Alignment:
| Q |
925 |
aagcacgtacactcctctgattaggcgtgtcccg |
958 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
19820333 |
aagcacggacactcctctgattaggcgtgtcccg |
19820366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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