View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4567-Insertion-2 (Length: 966)
Name: NF4567-Insertion-2
Description: NF4567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4567-Insertion-2 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 932; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 932; E-Value: 0
Query Start/End: Original strand, 8 - 966
Target Start/End: Complemental strand, 41897040 - 41896081
Alignment:
| Q |
8 |
ggattgacaatgttaactatgcatacaagcaaatcagcaaaactgatttattgtttagagtcttcagtgcacttggtcaaatctcatttgcattttctgg |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41897040 |
ggattgacaatgttaactatgcatacaagcaaatcagcaaaactgatttattgtttagagtcttcagtgcacttggtcaaatctcatttgcattttctgg |
41896941 |
T |
|
| Q |
108 |
ccaagcagtgacactagaaattcaggctacaattccatcaacacctgagaaaccttcaaagataccaatgtggaaaggtgctatttgtgcctatttaatc |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896940 |
ccaagcagtgacactagaaattcaggctacaattccatcaacacctgagaaaccctcaaagataccaatgtggaaaggtgctatttgtgcctatttaatc |
41896841 |
T |
|
| Q |
208 |
aatgcaatatgctatttccctgttgcaaccttaggatattgggcttttggacaagatgttgacgataacatacttatgtcacttgaaagaccttcatggc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41896840 |
aatgcaatatgctatttccctgttgcaaccttaggatattgggcttttggacaagatgttgatgataacatacttatgtcacttgaaagaccttcatggc |
41896741 |
T |
|
| Q |
308 |
ttgttgcttctgctaatttgatggtattcatcaatgttcttggtagctaccaggtaggtctctatgcaaaaccaagacatgaaattggcgaaaatagcga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896740 |
ttgttgcttctgctaatttgatggtattcatcaatgttcttggtagctaccaggtaggtctctatgcaaaaccaagacatgaaattggcgaaaatagcga |
41896641 |
T |
|
| Q |
408 |
caattttgtgattataagcgaaaacaaacaatgtttttctaccttaaattttcttttttgattaatggcgcaaaaatatgttataggtttatgccatgcc |
507 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41896640 |
caattttgtgattataagcgaaaacaaaaaatgtttttctaccttaaattttcttttttgattaatggcgcgaaaatatgttataggtttatgccatgcc |
41896541 |
T |
|
| Q |
508 |
tgttttcgacttgattgaggggacgatggttcgacgattgaacttccctcctagtgtagcgcttagacttgtagctcgatccgcctatgtaggtaagatg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896540 |
tgttttcgacttgattgaggggacgatggttcgacgattgaacttccctcctagtgtagcgcttagacttgtagctcgatccgcctatgtaggtaagatg |
41896441 |
T |
|
| Q |
608 |
gcaaaacttgagtcaaaactaatctatgttatcattaatattacatagcaaattttcagtagtagagtaagttatagaagtattatttaatttcttcatg |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896440 |
gcaaaacttgagtcaaaactaatctatgttatcattaatattacatagcaaattttcagtagtagagtaagttatagaagtattatttaatttcttcatg |
41896341 |
T |
|
| Q |
708 |
aaaatcttgatgttgctacaatttgttgatatgtttcagcttttacattattatttggggtgagttttcctttctttggagatcttcttgggttctttgg |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896340 |
aaaatcttgatgttgctacaatttgttgatatgtttcagcttttacattattatttggggtgagttttcctttctttggagatcttcttgggttctttgg |
41896241 |
T |
|
| Q |
808 |
tggatttggttttgctcccacatcatattttgtaaggcactcttgtcctctcaatttctctatgcttatgtc-aattgtcaaatttttaaatgaattaat |
906 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41896240 |
tggatttggttttgctcccacgtcatattttgtaaggcactcttgtcctctcaatttctctatgcttatgtcaaattgtcaaatttttaaatgaattaat |
41896141 |
T |
|
| Q |
907 |
tataaaatcaaaagatgaattattttcttgtgaattatttcagcttcctagtataatgtg |
966 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896140 |
tataaaatcaaaagatgaattattttcttgtgaattatttcagcttcctagtataatgtg |
41896081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 8 - 363
Target Start/End: Complemental strand, 41891464 - 41891109
Alignment:
| Q |
8 |
ggattgacaatgttaactatgcatacaagcaaatcagcaaaactgatttattgtttagagtcttcagtgcacttggtcaaatctcatttgcattttctgg |
107 |
Q |
| |
|
||||||||||||||| |||||||||||| | |||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| |||| |
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| T |
41891464 |
ggattgacaatgttagctatgcatacaaaccaatcagcaaaactgatttattgttcagagtcttcaatgcacttggtcaaatatcatttgcatttgctgg |
41891365 |
T |
|
| Q |
108 |
ccaagcagtgacactagaaattcaggctacaattccatcaacacctgagaaaccttcaaagataccaatgtggaaaggtgctatttgtgcctatttaatc |
207 |
Q |
| |
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||| |||||||| || |||||||| ||||| ||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||||||||||| ||| |
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| T |
41891364 |
ccatgcagtgacccttgaaattcaagctacgattccatcaacacctgaaaaaccatcaaagatagcaatgtggaatggtgctatttgtgcctatttcatc |
41891265 |
T |
|
| Q |
208 |
aatgcaatatgctatttccctgttgcaaccttaggatattgggcttttggacaagatgttgacgataacatacttatgtcacttgaaagaccttcatggc |
307 |
Q |
| |
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||||||||||| |||||||| ||||||| | | ||||||||| ||||||||||||||||| | ||||| ||||| ||||||||||||| ||||||||||| |
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| T |
41891264 |
aatgcaatatgttatttcccagttgcaatcattggatattggacttttggacaagatgttaatgataatatactaatgtcacttgaaaaaccttcatggc |
41891165 |
T |
|
| Q |
308 |
ttgttgcttctgctaatttgatggtattcatcaatgttcttggtagctaccaggta |
363 |
Q |
| |
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|| |||| |||||||| ||||||||||||||| ||||| |||||||||| |||||| |
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| T |
41891164 |
ttattgcctctgctaacttgatggtattcatccatgttgttggtagctatcaggta |
41891109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 729 - 859
Target Start/End: Complemental strand, 41890707 - 41890577
Alignment:
| Q |
729 |
tttgttgatatgtttcagcttttacattattatttggggtgagttttcctttctttggagatcttcttgggttctttggtggatttggttttgctcccac |
828 |
Q |
| |
|
|||||||| | |||||||||||||||||||| ||||| || | |||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
41890707 |
tttgttgaaacgtttcagcttttacattattctttggagtcacttttccattctttggtgatcttcttggattctttggtggatttggttttgctcccac |
41890608 |
T |
|
| Q |
829 |
atcatattttgtaaggcactcttgtcctctc |
859 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |
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| T |
41890607 |
ttcatattttgtaaggctctcttgtcctctc |
41890577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 450 - 630
Target Start/End: Complemental strand, 41890932 - 41890752
Alignment:
| Q |
450 |
cttaaattttcttttttgattaatggcgcaaaaatatgttataggtttatgccatgcctgttttcgacttgattgaggggacgatggttcgacgattgaa |
549 |
Q |
| |
|
||||||||||||||| |||| || | |||||||| |||||||||||||| ||||||||||| || ||||||||| ||| |||| | ||| ||||||| |
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| T |
41890932 |
cttaaattttcttttctgatcggtgaggtaaaaatatattataggtttatgcaatgcctgtttttgatttgattgagaggatgatgatgcgaagattgaa |
41890833 |
T |
|
| Q |
550 |
cttccctcctagtgtagcgcttagacttgtagctcgatccgcctatgtaggtaagatggcaaaacttgagtcaaaactaat |
630 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| ||||||| ||| | |||||||| |
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|
| T |
41890832 |
cttccctcccggtgtagcgcttagacttgtagctcgatctgcttatgtaggtaagatgtcaaaactcgaggcgaaactaat |
41890752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 5e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 68 - 338
Target Start/End: Original strand, 22550530 - 22550800
Alignment:
| Q |
68 |
tcttcagtgcacttggtcaaatctcatttgcattttctggccaagcagtgacactagaaattcaggctacaattccatcaacacctgagaaaccttcaaa |
167 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| ||||||| ||||| |||| |||||||| || |||||||||||||||||||||||||| ||||| |
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| T |
22550530 |
tcttcaatgcacttggtcaaatttcatttgcatttgctggccatgcagtagcacttgaaattcaagcaacaattccatcaacacctgagaaaccatcaaa |
22550629 |
T |
|
| Q |
168 |
gataccaatgtggaaaggtgctatttgtgcctatttaatcaatgcaatatgctatttccctgttgcaaccttaggatattgggcttttggacaagatgtt |
267 |
Q |
| |
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|||||||||||||||||||||||| |||||||| | || ||||||||||| |||||||| |||||| | ||||||||||| |||||| ||||||| |
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| T |
22550630 |
aataccaatgtggaaaggtgctattggtgcctatgtcataaatgcaatatgttatttcccagttgcacttattggatattgggcatttggaagagatgtt |
22550729 |
T |
|
| Q |
268 |
gacgataacatacttatgtcacttgaaagaccttcatggcttgttgcttctgctaatttgatggtattcat |
338 |
Q |
| |
|
|| ||||| | |||||||||||||||||||| | ||||| |||| |||||||| |||||||||||||| |
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|
| T |
22550730 |
gaagataatgtgcttatgtcacttgaaagaccagcttggctcattgcctctgctaacttgatggtattcat |
22550800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 730 - 848
Target Start/End: Original strand, 22551861 - 22551979
Alignment:
| Q |
730 |
ttgttgatatgtttcagcttttacattattatttggggtgagttttcctttctttggagatcttcttgggttctttggtggatttggttttgctcccaca |
829 |
Q |
| |
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||||| || |||| ||||||||||| | || ||||||| | || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22551861 |
ttgttaatttgttgcagcttttacactttttattggggttacattccctttctttggcgatcttcttggcttctttggtggatttggttttgctcccact |
22551960 |
T |
|
| Q |
830 |
tcatattttgtaaggcact |
848 |
Q |
| |
|
|||||||||||||| |||| |
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|
| T |
22551961 |
tcatattttgtaagccact |
22551979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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