View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4567-Insertion-4 (Length: 610)
Name: NF4567-Insertion-4
Description: NF4567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4567-Insertion-4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 7 - 605
Target Start/End: Original strand, 45886978 - 45887589
Alignment:
| Q |
7 |
agtactgacggtagtggtgccacaaccattcccctcaaagaaacgggaacacattacttcatatgtgctgttcctgtacattgcataagtggtggcatga |
106 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45886978 |
agtacagacggtagtggtgccacaaccattcccctcaaaaaagcaggaactcattacttcatatgtgctgttcctgtacattgcataagtggtggcatga |
45887077 |
T |
|
| Q |
107 |
aactctctgttaaggttcaggattcttcttcttcctct---------------gctgctccttctgcagcaccatcaccatcaggaaaaggttcaccttc |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45887078 |
aactctctgttaaggttcaggattcttcttcttcttcttcttcttcttcttctgctgctccttctgctgcaccatcaccatcaggaaaaggttcaccttc |
45887177 |
T |
|
| Q |
192 |
ttccgatgacacccccgccgcaac---aaccaccaccaccattcctaccattgcagcaccatcaccatcaggaaaaggtttaccttccgatgacaccccc |
288 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45887178 |
ttccgatgacacccccgccgcaacaacaaccaccaccaccattcctaccattgcagcaccatcaccatcaggaaaaggtttaccttccgatgacaccccc |
45887277 |
T |
|
| Q |
289 |
gccgcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctacttgtatctcaccaattgttgccttcttttttattgtggagatggatcttg |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45887278 |
gccgcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctacttgtatctcaccaattgttgccttcttttttattgt-ttcatggatcttg |
45887376 |
T |
|
| Q |
389 |
atcaattaaatattggtgtgagataattttctaagatatat----------agaggccgtacttctatgnnnnnnnattcctgttccgtatcattatgaa |
478 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45887377 |
atcaattaaatattggtgtgagattattttctaagatatatatagccagacagaggccgtacttctatctttttttattcctgttccgtatcattatgaa |
45887476 |
T |
|
| Q |
479 |
tttgaatttttgtttgatctattcaaactcattcttgtagtattaattactaatctagtattgttttttctgtttttattattgtgcttaaatattgaat |
578 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45887477 |
tttgaatttttgtttgatctattcaaactcattcttgtggtattaattactaatctagtattgttttttc--------------tgcttaaatattgaat |
45887562 |
T |
|
| Q |
579 |
gattactggttactgatttttcttttt |
605 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
45887563 |
gattactggttactgatttttcttttt |
45887589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 7 - 610
Target Start/End: Original strand, 45703166 - 45703791
Alignment:
| Q |
7 |
agtactgacggtagtggtgccacaaccattcccctcaaagaaacgggaacacattacttcatatgtgctgttcctgtacattgcataagtggtggcatga |
106 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45703166 |
agtacagacggtagtggtgccacaaccattcccctcaaaaaagcaggaactcattacttcatatgtgctgttcctgtacattgcataagtggtggcatga |
45703265 |
T |
|
| Q |
107 |
aactctctgttaaggttcaggattcttcttcttcctctgct---------------------gctccttctgcagcaccatcaccatcaggaaaaggttc |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| || ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45703266 |
aactctctgttaaggttcaggattcttcttcttcttcttcttcttcttcttcttcttcttctgctccttctgctgcaccatcaccatcaggaaaaggttc |
45703365 |
T |
|
| Q |
186 |
accttcttccgatgacacccccgccgcaac---aaccaccaccaccattcctaccattgcagcaccatcaccatcaggaaaaggtttaccttccgatgac |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45703366 |
accttcttccgatgacacccccgccgcaacaacaaccaccaccaccattcctaccattgcagcaccatcaccatcaggaaaaggtttaccttccgatgac |
45703465 |
T |
|
| Q |
283 |
acccccgccgcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctacttgtatctcaccaattgttgccttcttttttattgtggagatgg |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45703466 |
acccccgccgcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctacttgtatctcaccaattgttgccttcttttttattgt-ttcatgg |
45703564 |
T |
|
| Q |
383 |
atcttgatcaattaaatattggtgtgagataattttctaagatatat----------agaggccgtacttctatgnnnnnnnattcctgttccgt--atc |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
45703565 |
atcttgatcaattaaatattggtgtgagattattttctaagatatatatagccagacagaggccgtacttctatctttttttattcctgttccgtacatc |
45703664 |
T |
|
| Q |
471 |
attatgaatttgaatttttgtttgatctattcaaactcattcttgtagtattaattactaatctagtattgttttttctgtttttattattgtgcttaaa |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45703665 |
attatgaatttgaatttttgtttgatctattcaaactcattcttgtggtattaattactaatctagtattgttttttc--------------tgcttaaa |
45703750 |
T |
|
| Q |
571 |
tattgaatgattactggttact-gatttttctttttattac |
610 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
45703751 |
tattgaatgattactggttactggatttttcttttttttac |
45703791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 45650422 - 45650211
Alignment:
| Q |
7 |
agtactgacggtagtggtgccacaaccattcccctcaaagaaacgggaacacattacttcatatgtgctgttcctgtacattgcataagtggtggcatga |
106 |
Q |
| |
|
||||||||| | |||||| ||||||||||||||||||| || | ||||||||||||||||||||||||||||||| |||||||| | |||||||||| |
|
|
| T |
45650422 |
agtactgacagcagtggtcccacaaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcctggacattgcaca---ggtggcatga |
45650326 |
T |
|
| Q |
107 |
aactctctgttaaggttcaggattcttcttcttcctctgctgctccttctgcagcaccatcaccatcaggaaaaggttcaccttcttccgatgacacccc |
206 |
Q |
| |
|
|||| |||||||| ||| ||| ||||||| | | ||| |||||||||||||| ||||||| |||||||| ||||||||||||||| |||| |||||| |
|
|
| T |
45650325 |
aactttctgttaaagttaaggcttcttctagtgcttcttctgctccttctgcaacaccatcgccatcagggaaaggttcaccttct---gatggcacccc |
45650229 |
T |
|
| Q |
207 |
cgccgcaacaaccaccac |
224 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
45650228 |
tgctgcaaccaccaccac |
45650211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 7 - 239
Target Start/End: Complemental strand, 45643158 - 45642941
Alignment:
| Q |
7 |
agtactgacggtagtggtgccacaaccattcccctcaaagaaacgggaacacattacttcatatgtgctgttcctgtacattgcataagtggtggcatga |
106 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| | |||||||| |
|
|
| T |
45643158 |
agtacagacagtagcggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcaca---tttggcatga |
45643062 |
T |
|
| Q |
107 |
aactctctgttaaggttcaggattcttcttcttcctctgctgctccttctgcagcaccatcaccatcaggaaaaggttcaccttcttccgatgacacccc |
206 |
Q |
| |
|
|||||| |||||||||| || |||| |||||||||||||||||| |||||| ||||||||| |||||||||| |||||||| |||||| |
|
|
| T |
45643061 |
aactctttgttaaggttaag---------ccttcttctgctgctccttctgcaacaccattaccatcagggaaaggttcac---cttccgatcgcacccc |
45642974 |
T |
|
| Q |
207 |
cgccgcaacaaccaccaccaccattcctaccat |
239 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| |
|
|
| T |
45642973 |
tgccgcaacaaccaccaccactactcctaccat |
45642941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 240 - 428
Target Start/End: Complemental strand, 45650276 - 45650089
Alignment:
| Q |
240 |
tgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctact |
339 |
Q |
| |
|
|||| ||||||| |||||||| ||||||| |||||| |||| |||||| || ||||| |||||||| |||||| ||| ||||||||||||||| ||||| |
|
|
| T |
45650276 |
tgcaacaccatcgccatcagggaaaggttcaccttctgatggcacccctgctgcaaccaccaccactactccttccacacaaagtgcatcttcatctact |
45650177 |
T |
|
| Q |
340 |
tgtatctcaccaattgttgccttcttttttattgtggagatggatcttgatcaattaaatattggtgtgagataattttctaagatata |
428 |
Q |
| |
|
||||||||||||||||||| || ||||| | ||| |||||||||||||| ||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
45650176 |
agtatctcaccaattgttgctttatttttcactgt-ttcatggatcttgatcagttatatactggtgtgagataattttccgagatata |
45650089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 240 - 368
Target Start/End: Complemental strand, 45643021 - 45642890
Alignment:
| Q |
240 |
tgcagcaccatcaccatcaggaaaaggtttaccttccgatgacacccccgccgcaacaaccaccaccact---cctaccatgcaaagtgcatcttcagct |
336 |
Q |
| |
|
|||| |||||| ||||||||| ||||||| |||||||||| |||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
45643021 |
tgcaacaccattaccatcagggaaaggttcaccttccgatcgcacccctgccgcaacaaccaccaccactactcctaccatacaaagtgcatcttcagct |
45642922 |
T |
|
| Q |
337 |
acttgtatctcaccaattgttgccttcttttt |
368 |
Q |
| |
|
||| |||||||||| |||||| |||||||| |
|
|
| T |
45642921 |
actaccatctcaccaactgttgctttcttttt |
45642890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 359
Target Start/End: Original strand, 1193588 - 1193655
Alignment:
| Q |
292 |
gcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctacttgtatctcaccaattgttgc |
359 |
Q |
| |
|
||||| |||||||| |||||||| | |||||||||||||||||||||| | ||| |||||||||||| |
|
|
| T |
1193588 |
gcaactaccaccactactcctactacgcaaagtgcatcttcagctactaggctctaaccaattgttgc |
1193655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University