View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4567-Insertion-5 (Length: 525)
Name: NF4567-Insertion-5
Description: NF4567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4567-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 407
Target Start/End: Complemental strand, 7740372 - 7739976
Alignment:
| Q |
8 |
ttatcttggatggaaatccagataactatgatccatttcctttgagaactaaagggttaacaccaaaacaacttaaactaaataatcacattggcggcaa |
107 |
Q |
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| T |
7740372 |
ttatcttggatggaaatccagataactatgatccatttcctttgagaactaaagggttaacaccaaaacatcttaaactaaataatcacattggcggcga |
7740273 |
T |
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| Q |
108 |
gtggagtgccacaatccaatttttgctgcaatttagatccatggtattaacctagagtctatctaattaactgtatttggggtagcacttcagggccatt |
207 |
Q |
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| T |
7740272 |
gtggagtgccacaatccaatttttgctgcaatttagatccatggtattaacctagagtctatctaattaaatgtatttggggtagcacttcagggccatt |
7740173 |
T |
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| Q |
208 |
ggataagtaatggcatgtgccactcgctcaataggacagtgccacatgacactccatattaacaaataaaataaaaaagctagttttatttcccttcctc |
307 |
Q |
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| T |
7740172 |
ggataagtaatggcatgtgccactcgcccaataggacaatgccacatgacactccatattaacaaataaaat---aaagctagttttatttcccttcctc |
7740076 |
T |
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| Q |
308 |
tctctttttcatagggaaaattataggttgacatcttcattttgtacacactttgtaccatcactgatgtggccggggtaattttgtattttcacagcac |
407 |
Q |
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| T |
7740075 |
tctctttttcatagggaaaattataggttgacatctttattttgtacacactttgtaccatcactcatgtggcaggggtaattttgtattttcacagcac |
7739976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 7740502 - 7740374
Alignment:
| Q |
8 |
ttatcttggatggaaatccagataactatgatccatttcctttgagaactaaagggttaacaccaaaacaacttaaactaaataatcacattggcggcaa |
107 |
Q |
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| T |
7740502 |
ttatcttggatggaactccagataactatgatccatttcctttcagaactaaagggtcaacaccaaaacatcttaaactaaataatcacattggcggcga |
7740403 |
T |
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| Q |
108 |
gtggagtgccac-aatccaatttttgctgc |
136 |
Q |
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| T |
7740402 |
gtgg-gtgccacaaatccaatttttgctgc |
7740374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 322 - 414
Target Start/End: Original strand, 36200067 - 36200159
Alignment:
| Q |
322 |
ggaaaattataggttgacatcttcattttgtacacactttgtaccatcactgatgtggccggggtaattttgtattttcacagcacaccatca |
414 |
Q |
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| T |
36200067 |
ggaaaattataggttgacatcttcattttgtacacactttgtaccaccactgatgtggcaggggtaattttgtattttcatagcacaccatca |
36200159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 449 - 525
Target Start/End: Complemental strand, 7739935 - 7739859
Alignment:
| Q |
449 |
aaaacttccaccaccgccgccttagccatccacccacaccgtcatcttcttcccctctttctccctaacctttgtcc |
525 |
Q |
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| T |
7739935 |
aaaacttccaccaccgccgccttagccatccacccacaccgtcatcttcttcccctctttctccctgacctttgtcc |
7739859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 449 - 525
Target Start/End: Original strand, 36200196 - 36200272
Alignment:
| Q |
449 |
aaaacttccaccaccgccgccttagccatccacccacaccgtcatcttcttcccctctttctccctaacctttgtcc |
525 |
Q |
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| T |
36200196 |
aaaacttccaccaccgcagccttagccatccacccacaccgacatcttcttcccctctttctccctgacctttgtcc |
36200272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 324 - 414
Target Start/End: Complemental strand, 52470997 - 52470907
Alignment:
| Q |
324 |
aaaattataggttgacatcttcattttgtacacactttgtaccatcactgatgtggccggggtaattttgtattttcacagcacaccatca |
414 |
Q |
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| T |
52470997 |
aaaattataggtagacatcttcattttgtacacactttgtaccaccactgatgtggtaggggtaattttgtattttcatagcacaccatca |
52470907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 449 - 525
Target Start/End: Complemental strand, 52470869 - 52470793
Alignment:
| Q |
449 |
aaaacttccaccaccgccgccttagccatccacccacaccgtcatcttcttcccctctttctccctaacctttgtcc |
525 |
Q |
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| T |
52470869 |
aaaacttccaccaccgccgccttagccatccacccacattgtcatcttcttcccctctttctccctgacctttgtcc |
52470793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 10147670 - 10147612
Alignment:
| Q |
322 |
ggaaaattataggttgacatcttcattttgtacacactttgtaccatcactgatgtggc |
380 |
Q |
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||||||| ||||||||||| ||| ||||| |||||||||||||||| |||||||||| |
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| T |
10147670 |
ggaaaatgataggttgacaactttattttatacacactttgtaccactgctgatgtggc |
10147612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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