View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4567-Insertion-6 (Length: 363)
Name: NF4567-Insertion-6
Description: NF4567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4567-Insertion-6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 40 - 363
Target Start/End: Complemental strand, 27484957 - 27484634
Alignment:
| Q |
40 |
aaagtctatgaacgggggagcacataccagaagct-atttttcttgtttttcttcattcttcatgtgcttttgatccttatgagtttgggacagaaattt |
138 |
Q |
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| T |
27484957 |
aaagtctgtgaacgggggagcacataccagaagcttatttttcttgtttttcttcattcttcacgtgcttttcatccttatgagtttgggacagaaattt |
27484858 |
T |
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| Q |
139 |
ttcaagttgtttagacttcaataacttcattgcgctccttgcttccttaacttccatgatatttcttgggtagattaattccatgttctatacaaaagaa |
238 |
Q |
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| T |
27484857 |
ttcaagttgtttagacttcaataacttcattgcgctccttgcttccttaacttccatgatatttcttgggtagattaattccatgttctatacaaaataa |
27484758 |
T |
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| Q |
239 |
aaactcaaaacacatatagaaatgagcgaacaaagcaacctagaatagtctaagtatgattagataaaaagtttgcagagtggtatatttgttttaatta |
338 |
Q |
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| T |
27484757 |
aaactc-aaacacatacagaaatgagcgaacaaagcaacctagaatagtctaagtatgattagataaaaagtttgcagagtggtatatttgttttaatta |
27484659 |
T |
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| Q |
339 |
taagaaaacaaataaaataaattga |
363 |
Q |
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| T |
27484658 |
taagaaaacaaataaaataaattga |
27484634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 36 - 359
Target Start/End: Complemental strand, 27492743 - 27492422
Alignment:
| Q |
36 |
gtacaaagtctatgaacgggggagcacataccagaagctatttttcttgtttttcttcattcttcatgtgcttttgatccttatgagtttgggacagaaa |
135 |
Q |
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| T |
27492743 |
gtacaaagtctatgaacgggtgagcacataccagaagctatttttcttgtttttcttcattcttcacgtgcttttcatccttatgagtttgggacaaaaa |
27492644 |
T |
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| Q |
136 |
tttttcaagttgtttagacttcaataacttcattgcgctccttgcttccttaacttccatgatatttcttgggtagattaattccatgttctatacaaaa |
235 |
Q |
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| T |
27492643 |
ttttccaagtt---tagacttcaataacttcattgcgctccttgcttccttaacttccatgatatttcttgggtagattaattccatgttctatacaaaa |
27492547 |
T |
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| Q |
236 |
gaaaaactcaaaacacatatagaaatgagcgaacaaagcaacctagaatagtctaagtatgattagataaaaagtttgcagagtggtatatttgttttaa |
335 |
Q |
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| T |
27492546 |
gaaaaactcaaaacacatatagaaatgagcgaacaaaacaacatagaatagtctaagtatgattagataaaaagtttgcaaagtggtatatttgttttaa |
27492447 |
T |
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| Q |
336 |
ttataagaaaac-aaataaaataaa |
359 |
Q |
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| T |
27492446 |
ttataaaaaaacaaaataaaataaa |
27492422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 333
Target Start/End: Original strand, 2307428 - 2307487
Alignment:
| Q |
274 |
caacctagaatagtctaagtatgattagataaaaagtttgcagagtggtatatttgtttt |
333 |
Q |
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||||||| |||||||||||||||||| ||||||||||| ||| |||||||| ||| |||| |
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| T |
2307428 |
caacctaaaatagtctaagtatgattggataaaaagttcgcaaagtggtatttttttttt |
2307487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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