View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4567-Insertion-7 (Length: 362)

Name: NF4567-Insertion-7
Description: NF4567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4567-Insertion-7
NF4567-Insertion-7
[»] chr2 (1 HSPs)
chr2 (8-362)||(43934251-43934583)


Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 8 - 362
Target Start/End: Original strand, 43934251 - 43934583
Alignment:
Q  8 atgctcccttaatttactacgctaatagctcaatttgcagctacatctaatattctaattagtaatttctaacattgtggaaacagaaccatactttaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43934251 atgctcccttaatttactacgctaatagctcaatttgcagctacatctaatattctaattagtaatttctaacattgtggaaacagaaccatactttaaa 43934350  T
Q  108 tatttacatttattctaagccccaacctctataccatttgaaccacacactcaatgtgatagtggaattttgattgctatatcatcacagtaaattaaat 207  Q
    ||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||| ||||||||||||||    
T  43934351 tatttacatttattctaagccccaacctctatacca-----------------atgtgatagtggaattttgattgctatatcattacagtaaattaaat 43934433  T
Q  208 gcttttcaaaactgttggtaaccttgcataacataaggtctagtaggctggtaaaataaaggtagcaagtggtgctaatcaagtggctagaaactgaatg 307  Q
    ||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43934434 gcttttcaaaactgttggtaaccttgcata-----aggtctagtaggctggtaaaataaaggtagcaagtggtgctaatcaagtggctagaaactgaatg 43934528  T
Q  308 agattcttcccccggaaaaaggaaaatggaagtacctcaattatcatatttcaca 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43934529 agattcttcccccggaaaaaggaaaatggaagtacctcaattatcatatttcaca 43934583  T

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