View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4567_high_6 (Length: 237)

Name: NF4567_high_6
Description: NF4567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4567_high_6
NF4567_high_6
[»] chr6 (40 HSPs)
chr6 (14-218)||(25071554-25071758)
chr6 (14-218)||(26974947-26975151)
chr6 (17-218)||(26635585-26635786)
chr6 (17-218)||(26741551-26741752)
chr6 (14-218)||(26949556-26949760)
chr6 (14-170)||(26617269-26617418)
chr6 (14-170)||(26723197-26723346)
chr6 (36-218)||(26811404-26811586)
chr6 (16-215)||(26959063-26959263)
chr6 (36-218)||(26848555-26848737)
chr6 (14-218)||(27665205-27665409)
chr6 (81-218)||(27214312-27214449)
chr6 (81-218)||(27234779-27234916)
chr6 (14-109)||(24715586-24715684)
chr6 (75-219)||(27698643-27698787)
chr6 (75-219)||(27724994-27725138)
chr6 (75-219)||(28781033-28781177)
chr6 (75-219)||(28786172-28786316)
chr6 (75-219)||(28792293-28792437)
chr6 (66-219)||(26802336-26802489)
chr6 (75-219)||(27229126-27229270)
chr6 (88-219)||(27604867-27604998)
chr6 (75-219)||(27611151-27611295)
chr6 (75-219)||(27718528-27718672)
chr6 (66-218)||(28234459-28234611)
chr6 (88-183)||(27531359-27531454)
chr6 (88-194)||(27593182-27593288)
chr6 (88-194)||(27678865-27678971)
chr6 (123-219)||(26622870-26622966)
chr6 (123-219)||(26728848-26728944)
chr6 (88-211)||(31284190-31284313)
chr6 (88-183)||(27338227-27338322)
chr6 (88-183)||(27398967-27399062)
chr6 (124-203)||(28098567-28098646)
chr6 (90-180)||(26055859-26055949)
chr6 (90-180)||(26075829-26075919)
chr6 (100-194)||(26893645-26893739)
chr6 (66-183)||(26646409-26646526)
chr6 (66-183)||(26752377-26752494)
chr6 (123-219)||(26884057-26884153)
[»] chr2 (1 HSPs)
chr2 (14-218)||(17993772-17993976)
[»] scaffold1254 (1 HSPs)
scaffold1254 (75-219)||(66-210)
[»] scaffold0419 (1 HSPs)
scaffold0419 (75-219)||(7419-7563)
[»] scaffold0349 (2 HSPs)
scaffold0349 (75-219)||(3571-3715)
scaffold0349 (75-219)||(14504-14648)
[»] scaffold0277 (2 HSPs)
scaffold0277 (75-219)||(13781-13925)
scaffold0277 (88-183)||(4833-4928)
[»] scaffold0038 (1 HSPs)
scaffold0038 (66-218)||(34620-34772)
[»] chr5 (1 HSPs)
chr5 (88-180)||(16688944-16689036)
[»] chr4 (6 HSPs)
chr4 (123-183)||(18679751-18679811)
chr4 (123-219)||(18699584-18699680)
chr4 (103-211)||(5091131-5091239)
chr4 (123-183)||(18655661-18655721)
chr4 (123-183)||(18724269-18724329)
chr4 (123-183)||(18731688-18731748)
[»] chr8 (1 HSPs)
chr8 (14-182)||(31903782-31903950)


Alignment Details
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 25071758 - 25071554
Alignment:
Q  14 atgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaag 113  Q
    ||||||||||||||||||||||||||||||| | |||||||||||| || | |||||||||||||  |||||||||||||||||  |||||||||| |||    
T  25071758 atgaagaagaagcatagtctttagagaagacgataatggcaattctcgaatcttcaatgctcttgcggagcgaaggtgtgatttcgtcacctctcttaag 25071659  T
Q  114 ctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatg 213  Q
    ||| |||| |||||| ||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  25071658 ctctttgtcatcaataaaggtgtggattcctttgtcagaaagagctttataaagattaccggtaaaaccgaatcgagtgtcggtacccctgaaactaatg 25071559  T
Q  214 aacac 218  Q
    |||||    
T  25071558 aacac 25071554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 26975151 - 26974947
Alignment:
Q  14 atgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaag 113  Q
    ||||||||||||||||||||||||||||||| | ||||| ||| || |||| |||||||||||||| |||||||||||||||||  || ||| | | |||    
T  26975151 atgaagaagaagcatagtctttagagaagacgataatggtaatcctcgagtcttcaatgctcttgaggagcgaaggtgtgatttcgtccccttttttaag 26975052  T
Q  114 ctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatg 213  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||    
T  26975051 ctccttgtcatcaatgaagatgttgattcctttgtcagaaagagctttatagaggttaccggtgaaaccgaatcgagtgtcggtacctctgaaactaatg 26974952  T
Q  214 aacac 218  Q
    |||||    
T  26974951 aacac 26974947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 26635786 - 26635585
Alignment:
Q  17 aagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctc 116  Q
    ||||||||||||| || |||||||| || | ||||||||| || || | |||||||||||||| ||||||||||||||||| ||| ||| | | ||||||    
T  26635786 aagaagaagcatattccttagagaaaacgataatggcaatcctcgactcttcaatgctcttgaggagcgaaggtgtgatttcatccccttttttaagctc 26635687  T
Q  117 cttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaac 216  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||||||||| ||||||||||||||||||    
T  26635686 cttgtcatcaatgaaggtgttgattcctttgtcagaaagagctttatagaggttaccggtgaaaccgaattgagtgtcggtgcccctgaaactaatgaac 26635587  T
Q  217 ac 218  Q
    ||    
T  26635586 ac 26635585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 26741752 - 26741551
Alignment:
Q  17 aagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctc 116  Q
    ||||||||||||| || |||||||| || | ||||||||| || || | |||||||||||||| ||||||||||||||||| ||| ||| | | ||||||    
T  26741752 aagaagaagcatattccttagagaaaacgataatggcaatcctcgactcttcaatgctcttgaggagcgaaggtgtgatttcatccccttttttaagctc 26741653  T
Q  117 cttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaac 216  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||||||||| ||||||||||||||||||    
T  26741652 cttgtcatcaatgaaggtgttgattcctttgtcagaaagagctttatagaggttaccggtgaaaccgaattgagtgtcggtgcccctgaaactaatgaac 26741553  T
Q  217 ac 218  Q
    ||    
T  26741552 ac 26741551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 26949760 - 26949556
Alignment:
Q  14 atgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaag 113  Q
    |||||||||||||||| || ||||| ||||| | |||||||||||| || | |||||| ||||||| ||| |||||||||||||  |||||| |||||||    
T  26949760 atgaagaagaagcatattccttagaaaagacgataatggcaattctcgattcttcaattctcttgaggagtgaaggtgtgatttcgtcacctttctgaag 26949661  T
Q  114 ctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatg 213  Q
    |||||| | ||||||||||||   |||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||    
T  26949660 ctccttatcatcaatgaaggttcggattcccttgtcagagagagctttatagagattaccggtgaaaccgaatcgagtgtcggtacctctgaaactaatg 26949561  T
Q  214 aacac 218  Q
    |||||    
T  26949560 aacac 26949556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 26617418 - 26617269
Alignment:
Q  14 atgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||||||    
T  26617418 atgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgc-------gagcgaaggtgtgatttcatcacctctctgaag 26617326  T
Q  114 ctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagatt 170  Q
    |||||||| ||||||||||||   || |||||||||| |||||||||||||||||||    
T  26617325 ctccttgtcatcaatgaaggttcggactcctttgtcacaaagagctttatagagatt 26617269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 26723346 - 26723197
Alignment:
Q  14 atgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||||||    
T  26723346 atgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgc-------gagcgaaggtgtgatttcatcacctctctgaag 26723254  T
Q  114 ctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagatt 170  Q
    |||||||| ||||||||||||   || |||||||||| |||||||||||||||||||    
T  26723253 ctccttgtcatcaatgaaggttcggactcctttgtcacaaagagctttatagagatt 26723197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 36 - 218
Target Start/End: Complemental strand, 26811586 - 26811404
Alignment:
Q  36 agagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtg 135  Q
    |||||| |||| ||||||||| || |||| |||||||||||||| |||||||||||||||||  |||||||||||||||||||||| ||||||||||||     
T  26811586 agagaatacaataatggcaatcctagagtgttcaatgctcttgaggagcgaaggtgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggtt 26811487  T
Q  136 ttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 218  Q
      ||||||||||||| |||||||||||||||||| ||| || || ||  ||||||||||| ||||||||||||||||||||||    
T  26811486 cggattcctttgtcacaaagagctttatagagatgaccggtgaagccagatcgagtgtcgatacccctgaaactaatgaacac 26811404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 26959263 - 26959063
Alignment:
Q  16 gaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaaga-gcgaaggtgtgattttatcacctctctgaagc 114  Q
    |||||||||||||| || |||||||| || | ||||||||| || |||| ||||||||||||  ||| ||||||||||||||| ||| ||| | | ||||    
T  26959263 gaagaagaagcatattccttagagaaaacgataatggcaatcctcgagtcttcaatgctctttgagaagcgaaggtgtgatttcatccccttttttaagc 26959164  T
Q  115 tccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatga 214  Q
    || |||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||| ||||||||||||||||    
T  26959163 tctttgtcatcaatgaaggtgtcgattcctttgtcagaaagagctttatagaggttaccggtgaaactgaatcgagtgtcggtgcccctgaaactaatga 26959064  T
Q  215 a 215  Q
    |    
T  26959063 a 26959063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 36 - 218
Target Start/End: Complemental strand, 26848737 - 26848555
Alignment:
Q  36 agagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtg 135  Q
    |||||| |||| ||||| ||| || |||| ||||||| |||||| ||||||||||||||| | |||||| |||||||| ||||||| ||||||||||||     
T  26848737 agagaatacaagaatggaaatcctcgagtcttcaatgttcttgaggagcgaaggtgtgatctcatcaccactctgaagatccttgtcatcaatgaaggtt 26848638  T
Q  136 ttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 218  Q
      |||||| |||||||||||||||||||||||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||    
T  26848637 cggattccattgtcagaaagagctttatagagattaccagtgaaactgaatctagtgtcggtgcccctgaaactaatgaacac 26848555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 27665205 - 27665409
Alignment:
Q  14 atgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaag 113  Q
    ||||||||| ||||||||  |||||||| | || ||||||||| || || | ||||||||||||   ||| |||||||||||||  |||||  |  ||||    
T  27665205 atgaagaagtagcatagttcttagagaatataataatggcaatcctcgattcttcaatgctcttccggagtgaaggtgtgatttcgtcaccagttggaag 27665304  T
Q  114 ctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatg 213  Q
    |||||||| |||||||||||||| ||||||||||||||||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||||||    
T  27665305 ctccttgtcatcaatgaaggtgtggattcctttgtcagaaagagccttatagaggttaccggtgaaaccaaatcgagtgtcggtacccctgaaactaatg 27665404  T
Q  214 aacac 218  Q
    |||||    
T  27665405 aacac 27665409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 81 - 218
Target Start/End: Complemental strand, 27214449 - 27214312
Alignment:
Q  81 gagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaa 180  Q
    |||||||| ||||||||  |||||||||||||||||||||| ||||||||||||   ||||||||||||| |||||||||||||||||||||| || |||    
T  27214449 gagcgaagatgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagattaccggtgaaa 27214350  T
Q  181 ccgaatcgagtgtcggtacccctgaaactaatgaacac 218  Q
    |||  |||||||||||||||||||||||||||||||||    
T  27214349 ccgtgtcgagtgtcggtacccctgaaactaatgaacac 27214312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 81 - 218
Target Start/End: Original strand, 27234779 - 27234916
Alignment:
Q  81 gagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaa 180  Q
    |||||||| ||||||||  |||||||||||||||||||||| ||||||||||||   ||||||||||||| |||||||||||||||||||||| || |||    
T  27234779 gagcgaagatgtgatttcgtcacctctctgaagctccttgtcatcaatgaaggttcggattcctttgtcacaaagagctttatagagattaccggtgaaa 27234878  T
Q  181 ccgaatcgagtgtcggtacccctgaaactaatgaacac 218  Q
    |||  |||||||||||||||||||||||||||||||||    
T  27234879 ccgtgtcgagtgtcggtacccctgaaactaatgaacac 27234916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 24715684 - 24715586
Alignment:
Q  14 atgaagaagaagcatagtct---ttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctct 109  Q
    ||||||||||||||||||||   ||||||||||||| |||||||||| | |||| ||| |||||||||| |||||||| |||||||| |||||||||||    
T  24715684 atgaagaagaagcatagtctaatttagagaagacaataatggcaattttcgagtcttcgatgctcttgaggagcgaagatgtgatttcatcacctctct 24715586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 219
Target Start/End: Original strand, 27698643 - 27698787
Alignment:
Q  75 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 174  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  27698643 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 27698742  T
Q  175 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 219  Q
    |||||||||   |||||||| || ||||| ||||| |||||||||    
T  27698743 gtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacact 27698787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 219
Target Start/End: Original strand, 27724994 - 27725138
Alignment:
Q  75 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 174  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  27724994 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 27725093  T
Q  175 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 219  Q
    |||||||||   |||||||| || ||||| ||||||| |||||||    
T  27725094 gtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacact 27725138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 28781177 - 28781033
Alignment:
Q  75 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 174  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| ||     
T  28781177 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccg 28781078  T
Q  175 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 219  Q
    |||||||||   |||||||| || ||||| ||||| | |||||||    
T  28781077 gtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacact 28781033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 28786316 - 28786172
Alignment:
Q  75 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 174  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| ||     
T  28786316 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccg 28786217  T
Q  175 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 219  Q
    |||||||||   |||||||| || ||||| ||||| | |||||||    
T  28786216 gtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacact 28786172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 28792437 - 28792293
Alignment:
Q  75 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 174  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| ||     
T  28792437 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccg 28792338  T
Q  175 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 219  Q
    |||||||||   |||||||| || ||||| ||||| | |||||||    
T  28792337 gtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacact 28792293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 219
Target Start/End: Complemental strand, 26802489 - 26802336
Alignment:
Q  66 ttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatag 165  Q
    |||||||  ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||  |||||| || |||    
T  26802489 ttcaatggccttgatgagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcaataagagccttgtag 26802390  T
Q  166 agattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 219  Q
    ||||| || ||||||||| | |||||||| || ||||| ||||| | |||||||    
T  26802389 agattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacact 26802336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 27229270 - 27229126
Alignment:
Q  75 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 174  Q
    ||||| ||| || ||||||||||  || ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  27229270 cttgacgagtgatggtgtgatttcgtctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccg 27229171  T
Q  175 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 219  Q
    |||||||||   |||||||| || ||||| ||||||| |||||||    
T  27229170 gtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacact 27229126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 27604867 - 27604998
Alignment:
Q  88 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatc 187  Q
    |||||||||| ||| |||||  |||| || || | |||||||||||| |  ||||| ||||||| |||||| || |||||||| || ||||||||| |||    
T  27604867 ggtgtgatttcatctcctcttcgaagatcattttcatcaatgaaggtatgaattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtatc 27604966  T
Q  188 gagtgtcggtacccctgaaactaatgaacact 219  Q
    ||||||| || ||||| ||||||| |||||||    
T  27604967 gagtgtcagtgcccctaaaactaaggaacact 27604998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 219
Target Start/End: Original strand, 27611151 - 27611295
Alignment:
Q  75 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 174  Q
    ||||| ||| || |||||||||| ||| |||||  |||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  27611151 cttgaggagtgatggtgtgatttcatctcctcttggaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 27611250  T
Q  175 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 219  Q
    |||||||||   |||||||| || ||||| ||||| | |||||||    
T  27611251 gtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacact 27611295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 219
Target Start/End: Original strand, 27718528 - 27718672
Alignment:
Q  75 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 174  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  27718528 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 27718627  T
Q  175 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 219  Q
    ||||||| |   |||||||| || ||||| ||||| | |||||||    
T  27718628 gtaaaactgtgccgagtgtcagtgcccctaaaactgaggaacact 27718672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 28234611 - 28234459
Alignment:
Q  66 ttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatag 165  Q
    |||||||  |||||| || || ||||| |||| ||| ||||  ||||||||| ||| |||||||||||||| |||||| |||| | |||||||| |||||    
T  28234611 ttcaatggccttgaaaagtgatggtgttatttcatctcctccttgaagctccctgtcatcaatgaaggtgtggattcccttgtgacaaagagctctatag 28234512  T
Q  166 agattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 218  Q
    |||||  | ||||||||  | ||||||||  |||| || ||||||| ||||||    
T  28234511 agattttcggtaaaaccatagcgagtgtcactacctctaaaactaaggaacac 28234459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 27531359 - 27531454
Alignment:
Q  88 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 183  Q
    |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| || |||||||||    
T  27531359 ggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatagattcccttgtcagtaagagccttgtagagatttccggtaaaaccg 27531454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 27593182 - 27593288
Alignment:
Q  88 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatc 187  Q
    |||||||||| ||  ||||| |||||  | |||| ||||||||||||||||||||| ||||||| |||||| || |||||||| || || |||||| | |    
T  27593182 ggtgtgatttcatttcctctttgaagaccattgtcatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattgccggtgaaaccgtacc 27593281  T
Q  188 gagtgtc 194  Q
    |||||||    
T  27593282 gagtgtc 27593288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 27678971 - 27678865
Alignment:
Q  88 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatc 187  Q
    |||||||||| ||| ||||| |||||  | || | ||||||||||||||||||||| ||||||| |||||| || |||||||| || || |||||| | |    
T  27678971 ggtgtgatttcatctcctctttgaagaccattcttatcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattcccggtgaaaccgtacc 27678872  T
Q  188 gagtgtc 194  Q
    |||||||    
T  27678871 gagtgtc 27678865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 26622966 - 26622870
Alignment:
Q  123 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 219  Q
    |||||||||||||| |||||| ||||||| |||||| || |||||||| ||||| |||||| | ||||||||  | || |||||||| | |||||||    
T  26622966 atcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacact 26622870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 26728944 - 26728848
Alignment:
Q  123 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 219  Q
    |||||||||||||| |||||| ||||||| |||||| || |||||||| ||||| |||||| | ||||||||  | || |||||||| | |||||||    
T  26728944 atcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacact 26728848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 211
Target Start/End: Complemental strand, 31284313 - 31284190
Alignment:
Q  88 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatc 187  Q
    |||||||||| ||| ||||| ||||| ||  | | |||||||||||||| |||||| ||||||| |||||| || |||||||| || || |||||  | |    
T  31284313 ggtgtgatttcatcccctctttgaagttcactatcatcaatgaaggtgtggattcccttgtcagtaagagccttgtagagattgccggtgaaaccatacc 31284214  T
Q  188 gagtgtcggtacccctgaaactaa 211  Q
    |||||||  | |||||||||||||    
T  31284213 gagtgtcacttcccctgaaactaa 31284190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 27338227 - 27338322
Alignment:
Q  88 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 183  Q
    |||||| ||| ||| ||||| | ||| || |||| |||||||||||| |||||||| ||||||  |||||| || |||||||| || |||||||||    
T  27338227 ggtgtgctttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaaccg 27338322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 27398967 - 27399062
Alignment:
Q  88 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 183  Q
    |||||| ||| ||| ||||| | ||| || |||| |||||||||||| |||||||| ||||||  |||||| || |||||||| || |||||||||    
T  27398967 ggtgtgctttcatctcctctttcaagatcgttgtcatcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaaccg 27399062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 28098567 - 28098646
Alignment:
Q  124 tcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccct 203  Q
    ||||||||||||  || ||||  |||| |||||||||| |||||||| |||||||||||  | ||||||||||| |||||    
T  28098567 tcaatgaaggtgcggactcctccgtcacaaagagctttgtagagatttccagtaaaaccataccgagtgtcggtgcccct 28098646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 26055949 - 26055859
Alignment:
Q  90 tgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaa 180  Q
    |||||||| ||| ||||| ||||| || || | ||||||||| || || ||||| ||||||  |||||| |||||||||||||| ||||||    
T  26055949 tgtgatttcatctcctctttgaagatcattttcatcaatgaaagtattaattcccttgtcaacaagagccttatagagattaccggtaaaa 26055859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 26075919 - 26075829
Alignment:
Q  90 tgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaa 180  Q
    |||||||| ||| ||||| ||||| || || | ||||||||| || || ||||| ||||||  |||||| |||||||||||||| ||||||    
T  26075919 tgtgatttcatctcctctttgaagatcattttcatcaatgaaagtattaattcccttgtcaacaagagccttatagagattaccggtaaaa 26075829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 194
Target Start/End: Original strand, 26893645 - 26893739
Alignment:
Q  100 tcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtc 194  Q
    |||||||| ||||||||  | | ||||||||||||||  |||||  | ||| ||||||||||||| |||| ||| |||||||| || ||||||||    
T  26893645 tcacctctatgaagctctgtatcatcaatgaaggtgtgaattccactatcacaaagagctttataaagatgacccgtaaaaccaaaacgagtgtc 26893739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 183
Target Start/End: Complemental strand, 26646526 - 26646409
Alignment:
Q  66 ttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatag 165  Q
    |||||||  ||||| ||| || |||||||||| ||| ||||||| ||| ||    | ||||||||||||||  ||||| ||||||| |||||| || |||    
T  26646526 ttcaatggccttgatgagtgatggtgtgatttcatctcctctcttaagatcacaatcatcaatgaaggtgtgaattcccttgtcagtaagagccttgtag 26646427  T
Q  166 agattaccagtaaaaccg 183  Q
    ||||  ||||||||||||    
T  26646426 agatgtccagtaaaaccg 26646409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 183
Target Start/End: Complemental strand, 26752494 - 26752377
Alignment:
Q  66 ttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatag 165  Q
    |||||||  ||||| ||| || |||||||||| ||| ||||||| ||| ||    | ||||||||||||||  ||||| ||||||| |||||| || |||    
T  26752494 ttcaatggccttgatgagtgatggtgtgatttcatctcctctcttaagatcacaatcatcaatgaaggtgtgaattcccttgtcagtaagagccttgtag 26752395  T
Q  166 agattaccagtaaaaccg 183  Q
    ||||  ||||||||||||    
T  26752394 agatgtccagtaaaaccg 26752377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 26884153 - 26884057
Alignment:
Q  123 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 219  Q
    |||||||||||||| |||||| |||| || |||||| || |||||||| ||||| |||||  | ||||||||  | || |||||||| | |||||||    
T  26884153 atcaatgaaggtgtggattcccttgttagtaagagccttgtagagatttccagtgaaaccataccgagtgtcacttcctctgaaactgaggaacact 26884057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 17993772 - 17993976
Alignment:
Q  14 atgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaag 113  Q
    ||||||||||||||||||| || |||||||| | ||| ||||||||||||| |||||||||||||| |||||| |||||||||| |||||||||||||||    
T  17993772 atgaagaagaagcatagtcctttgagaagacgataatcgcaattcttgagtcttcaatgctcttgaggagcgacggtgtgatttcatcacctctctgaag 17993871  T
Q  114 ctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatg 213  Q
    ||| |||| ||| ||||||||    ||||| ||||||||||||||||||||||||||||| || |||||  ||||||| |||||||||||||||||||||    
T  17993872 ctctttgtcatcgatgaaggttcgaattcccttgtcagaaagagctttatagagattaccggtgaaaccatatcgagtatcggtacccctgaaactaatg 17993971  T
Q  214 aacac 218  Q
    |||||    
T  17993972 aacac 17993976  T

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Target: scaffold1254 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 219
Target Start/End: Original strand, 66 - 210
Alignment:
Q  75 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 174  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| ||     
T  66 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccg 165  T
Q  175 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 219  Q
    |||||||||   |||||||| || ||||| ||||||| |||||||    
T  166 gtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacact 210  T

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Target: scaffold0419 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 7563 - 7419
Alignment:
Q  75 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 174  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| ||     
T  7563 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccg 7464  T
Q  175 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 219  Q
    |||||||||   |||||||| || ||||| ||||||| |||||||    
T  7463 gtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacact 7419  T

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Target: scaffold0349 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 219
Target Start/End: Original strand, 3571 - 3715
Alignment:
Q  75 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 174  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  3571 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 3670  T
Q  175 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 219  Q
    |||||||||   |||||||| || ||||| ||||||| |||||||    
T  3671 gtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacact 3715  T

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Target: scaffold0349; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 219
Target Start/End: Original strand, 14504 - 14648
Alignment:
Q  75 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 174  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| | |||||| ||||||| |||||| || |||||||| ||     
T  14504 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccg 14603  T
Q  175 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 219  Q
    |||||||||   |||||||| || ||||| ||||| |||||||||    
T  14604 gtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacact 14648  T

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Target: scaffold0277 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 219
Target Start/End: Original strand, 13781 - 13925
Alignment:
Q  75 cttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattacca 174  Q
    ||||| ||| || |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| ||     
T  13781 cttgaggagtgatggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccg 13880  T
Q  175 gtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 219  Q
    |||||||||   |||||||| || ||||| ||||| | |||||||    
T  13881 gtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacact 13925  T

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Target: scaffold0277; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 4833 - 4928
Alignment:
Q  88 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 183  Q
    |||||||||| ||| ||||| ||||| || |||| |||||||||||| |||||||| ||||||| |||||| || |||||||| || |||||||||    
T  4833 ggtgtgatttcatctcctctttgaagatcattgtcatcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccg 4928  T

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Target: scaffold0038 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 34772 - 34620
Alignment:
Q  66 ttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatag 165  Q
    |||||||  |||||| || || ||||| |||| ||| ||||  ||||||||| ||| |||||||||||||| |||||| |||| | |||||||| |||||    
T  34772 ttcaatggccttgaaaagtgatggtgttatttcatctcctccttgaagctccctgtcatcaatgaaggtgtggattcccttgtgacaaagagctctatag 34673  T
Q  166 agattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacac 218  Q
    |||||  | ||||||||  | ||||||||  |||| || ||||||| ||||||    
T  34672 agattttcggtaaaaccatagcgagtgtcactacctctaaaactaaggaacac 34620  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 16689036 - 16688944
Alignment:
Q  88 ggtgtgattttatcacctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaa 180  Q
    ||||||||||| |||||||||||||| ||||||| ||||||||||     |||||| |||||| | |||||||| || |||||||||||||||    
T  16689036 ggtgtgattttgtcacctctctgaagttccttgtcatcaatgaagacacggattcccttgtcacatagagctttgtacagattaccagtaaaa 16688944  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 18679751 - 18679811
Alignment:
Q  123 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 183  Q
    |||||||||||||| |||||||||||||| |||||| || ||||||| |||||||||||||    
T  18679751 atcaatgaaggtgtggattcctttgtcagtaagagccttgtagagatgaccagtaaaaccg 18679811  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 219
Target Start/End: Original strand, 18699584 - 18699680
Alignment:
Q  123 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccctgaaactaatgaacact 219  Q
    |||||||||||||| |||||| ||||||| ||||||||| |||||||  ||||||||||||   |||||||| || |||||||| || | |||||||    
T  18699584 atcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatggccagtaaaaccgtcacgagtgtcagtgcccctgaagctgaggaacact 18699680  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 5091131 - 5091239
Alignment:
Q  103 cctctctgaagctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccgaatcgagtgtcggtacccc 202  Q
    |||| |||||||||  ||| ||||||||||||||  ||||| ||| ||   ||||||| ||||||||| |||||||||||| | ||||||||||| || |    
T  5091131 cctcgctgaagctctctgtcatcaatgaaggtgtgaattcccttgacacgtagagcttcatagagatttccagtaaaaccgtaacgagtgtcggtgcctc 5091230  T
Q  203 tgaaactaa 211  Q
    | |||||||    
T  5091231 taaaactaa 5091239  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 18655661 - 18655721
Alignment:
Q  123 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 183  Q
    |||||||||||||| |||||| ||||||| ||||||||| |||||||  ||||||||||||    
T  18655661 atcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatgcccagtaaaaccg 18655721  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 18724269 - 18724329
Alignment:
Q  123 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 183  Q
    |||||||||||||| |||||| ||||||| |||||| || ||||||| |||||||||||||    
T  18724269 atcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatgaccagtaaaaccg 18724329  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 18731688 - 18731748
Alignment:
Q  123 atcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaaccg 183  Q
    |||||||||||||| |||||| ||||||| ||||||| | |||||||  ||||||||||||    
T  18731688 atcaatgaaggtgtggattcccttgtcagtaagagctctgtagagatggccagtaaaaccg 18731748  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 31903950 - 31903782
Alignment:
Q  14 atgaagaagaagcatagtctttagagaagacaacaatggcaattcttgagttttcaatgctcttgaagagcgaaggtgtgattttatcacctctctgaag 113  Q
    |||||||||||||||||| ||||||||  |||| ||||||||| || || | ||||||   ||  || || || |||||||||| ||  ||||| |||||    
T  31903950 atgaagaagaagcatagtttttagagagcacaataatggcaatcctagactcttcaattgcctctaaaagtgatggtgtgatttcatgtcctctttgaag 31903851  T
Q  114 ctccttgtaatcaatgaaggtgttgattcctttgtcagaaagagctttatagagattaccagtaaaacc 182  Q
     || |  |  ||||| ||||||| |||||| || ||| |||||||||| |||||||| |||||||||||    
T  31903850 ttcttcatcgtcaataaaggtgtggattcccttatcataaagagctttgtagagatttccagtaaaacc 31903782  T

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