View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4567_low_1 (Length: 670)

Name: NF4567_low_1
Description: NF4567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4567_low_1
NF4567_low_1
[»] chr1 (6 HSPs)
chr1 (23-608)||(26831611-26832197)
chr1 (47-178)||(26817885-26818016)
chr1 (46-172)||(26784994-26785120)
chr1 (46-178)||(26791197-26791329)
chr1 (482-534)||(10629409-10629461)
chr1 (117-158)||(41546623-41546664)
[»] chr7 (1 HSPs)
chr7 (45-167)||(41919467-41919589)
[»] chr4 (2 HSPs)
chr4 (46-162)||(20237292-20237408)
chr4 (493-541)||(42488745-42488793)
[»] chr6 (1 HSPs)
chr6 (494-531)||(3218632-3218669)
[»] chr8 (1 HSPs)
chr8 (493-541)||(24074542-24074590)
[»] chr5 (1 HSPs)
chr5 (493-541)||(14487597-14487645)
[»] chr3 (1 HSPs)
chr3 (492-536)||(31435511-31435555)


Alignment Details
Target: chr1 (Bit Score: 511; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 23 - 608
Target Start/End: Original strand, 26831611 - 26832197
Alignment:
Q  23 gcgatgagattagattagggattttaccgttgaagccaaagaaggcgtaagaggaagatccaacttcttgttcaactgtaaaatgataattgagtgacat 122  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26831611 gcgatgagattagattaggggttttaccgttgaagccaaagaaggcgtaagaggaagatccaacttcttgttcaactgtaaaatgataattgagtgacat 26831710  T
Q  123 ctcttgcatccttgtcattaaacattcatccgcattcactaaaaacaaagggaaaatcacacatcgttaattaattaattcaacaaccttgcttcgatgc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26831711 ctcttgcatccttgtcattaaacattcatccgcattcactaaaaacaaagggaaaatcacacatcgttaattaattaattcaacaaccttgcttcgatgc 26831810  T
Q  223 aaattaattgctatatagtttatcttatactgattagaaattattttgcaggatagtacaaatattaattaatccgttcattactaatagatacataaac 322  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26831811 aaattaattgctatatagtttatcttatactgattaggaattattttgcaggatagtacaaatattaattaatcagttcattactaatagatacataaac 26831910  T
Q  323 agttactggaaaatagggtccactattaaattaaaattgcacatgcagctgataatgtattagtaggagattagtctcttcttcaa-gtgtttcctaatt 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  26831911 agttactggaaaatagggtccactattaaattaaaattgcacatgcagctgataatgtaatagtaggagattagtctcttcttcaatgtgtttcctaatt 26832010  T
Q  422 aaggtgatgatgnnnnnnnnttaagttagtctatatgcactatatcatcctagtagttggaaattcatcgaaaggtgaataagtgagaagtccgaggttc 521  Q
    || |||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||     
T  26832011 aatgtgatgatgaaaaaaaattaagttagtctatatgcactatatcatcctagtagttggaaattcatctaaaagtgaataagtgagaagtccgaggttt 26832110  T
Q  522 gaacctcaacccctagatattgcggacgtttgccgcagaaaccaactcaatgcagccataaatgaagtctaagcattcataatactc 608  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  26832111 gaacctcaacccctggatattgcggacgtttgccgcagaaaccaactcaatgcagccataaatgaagtcttagcatccataatactc 26832197  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 47 - 178
Target Start/End: Original strand, 26817885 - 26818016
Alignment:
Q  47 taccgttgaagccaaagaaggcgtaagaggaagatccaacttcttgttcaactgtaaaatgataattgagtgacatctcttgcatccttgtcattaaaca 146  Q
    |||| |||||||||||||||||||||| ||||||||| ||||||||||| ||  |||||||||||| ||||||||| | ||||||||| ||||| |||||    
T  26817885 taccattgaagccaaagaaggcgtaagcggaagatcccacttcttgttctaccttaaaatgataatcgagtgacatttgttgcatcctcgtcatcaaaca 26817984  T
Q  147 ttcatccgcattcactaaaaacaaagggaaaa 178  Q
    ||| | |||||||||| ||||||||| |||||    
T  26817985 ttcgttcgcattcactgaaaacaaagagaaaa 26818016  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 26784994 - 26785120
Alignment:
Q  46 ttaccgttgaagccaaagaaggcgtaagaggaagatccaacttcttgttcaactgtaaaatgataattgagtgacatctcttgcatccttgtcattaaac 145  Q
    ||||| ||||||||||||||||| ||||  ||||| || |||||||||||||| |||||||||||||  |||||||||| ||||||||| ||||| ||||    
T  26784994 ttaccattgaagccaaagaaggcataagtagaagaccccacttcttgttcaaccgtaaaatgataatcaagtgacatcttttgcatcctcgtcatcaaac 26785093  T
Q  146 attcatccgcattcactaaaaacaaag 172  Q
    |||||| |||||| |||||||||||||    
T  26785094 attcattcgcatttactaaaaacaaag 26785120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 26791197 - 26791329
Alignment:
Q  46 ttaccgttgaagccaaagaaggcgtaagaggaagatccaacttcttgttcaactgtaaaatgataattgagtgacatctcttgcatccttgtcattaaac 145  Q
    ||||| ||||||||||||||||| |||| |||||| || ||||||||||| ||  ||||||| ||||  |||||||| | ||||||||| ||||||||||    
T  26791197 ttaccattgaagccaaagaaggcataagtggaagaccctacttcttgttccaccttaaaatggtaatcaagtgacatttgttgcatcctcgtcattaaac 26791296  T
Q  146 attcatccgcattcactaaaaacaaagggaaaa 178  Q
    ||||||  |||||||||||||||| ||||||||    
T  26791297 attcatttgcattcactaaaaacatagggaaaa 26791329  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 482 - 534
Target Start/End: Complemental strand, 10629461 - 10629409
Alignment:
Q  482 aaattcatcgaaaggtgaataagtgagaagtccgaggttcgaacctcaacccc 534  Q
    ||||||||| |||||||||||| || || |||||||||||||||| |||||||    
T  10629461 aaattcatctaaaggtgaataaatgggatgtccgaggttcgaaccccaacccc 10629409  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 41546664 - 41546623
Alignment:
Q  117 tgacatctcttgcatccttgtcattaaacattcatccgcatt 158  Q
    ||||||||||||||| ||||||||||| |||||||| |||||    
T  41546664 tgacatctcttgcattcttgtcattaagcattcatcagcatt 41546623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 41919589 - 41919467
Alignment:
Q  45 tttaccgttgaagccaaagaaggcgtaagaggaagatccaacttcttgttcaactgtaaaatgataattgagtgacatctcttgcatccttgtcattaaa 144  Q
    |||||||||||||||||||||||| |||| |||||| || ||||||||||| || |||||||| ||||  ||||||||||||||||| || ||||| | |    
T  41919589 tttaccgttgaagccaaagaaggcataagtggaagaccccacttcttgttccacagtaaaatggtaatctagtgacatctcttgcattctagtcatcata 41919490  T
Q  145 cattcatccgcattcactaaaaa 167  Q
    |||||||||| ||||||| ||||    
T  41919489 cattcatccgaattcactgaaaa 41919467  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 162
Target Start/End: Original strand, 20237292 - 20237408
Alignment:
Q  46 ttaccgttgaagccaaagaaggcgtaagaggaagatccaacttcttgttcaactgtaaaatgataattgagtgacatctcttgcatccttgtcattaaac 145  Q
    ||||| |||||||||||||| || | ||  |  |||||||||||||| |||||||| ||||| ||||  |  |||||||||||||| |||||||  ||||    
T  20237292 ttaccattgaagccaaagaaagcatgagtagctgatccaacttcttgctcaactgtgaaatggtaatccaaagacatctcttgcattcttgtcaacaaac 20237391  T
Q  146 attcatccgcattcact 162  Q
    ||||||  |||||||||    
T  20237392 attcatttgcattcact 20237408  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 541
Target Start/End: Complemental strand, 42488793 - 42488745
Alignment:
Q  493 aaggtgaataagtgagaagtccgaggttcgaacctcaacccctagatat 541  Q
    ||||||||||||||||  |||||||||| ||||| ||||||||| ||||    
T  42488793 aaggtgaataagtgaggcgtccgaggtttgaaccccaacccctacatat 42488745  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 494 - 531
Target Start/End: Complemental strand, 3218669 - 3218632
Alignment:
Q  494 aggtgaataagtgagaagtccgaggttcgaacctcaac 531  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  3218669 aggtgaataagtgagaagttcgaggttcgaacctcaac 3218632  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 493 - 541
Target Start/End: Complemental strand, 24074590 - 24074542
Alignment:
Q  493 aaggtgaataagtgagaagtccgaggttcgaacctcaacccctagatat 541  Q
    ||||||||||||||||  ||||||||||||||| |||||||||| ||||    
T  24074590 aaggtgaataagtgaggtgtccgaggttcgaacttcaacccctacatat 24074542  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 541
Target Start/End: Complemental strand, 14487645 - 14487597
Alignment:
Q  493 aaggtgaataagtgagaagtccgaggttcgaacctcaacccctagatat 541  Q
    |||||||||||||| ||  ||||||||||||||| ||||||||| ||||    
T  14487645 aaggtgaataagtgggatatccgaggttcgaaccccaacccctacatat 14487597  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 492 - 536
Target Start/End: Original strand, 31435511 - 31435555
Alignment:
Q  492 aaaggtgaataagtgagaagtccgaggttcgaacctcaaccccta 536  Q
    |||| |||||||||| || |||||||||||||||| |||||||||    
T  31435511 aaagatgaataagtgggatgtccgaggttcgaaccccaaccccta 31435555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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