View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4567_low_2 (Length: 484)

Name: NF4567_low_2
Description: NF4567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4567_low_2
NF4567_low_2
[»] chr1 (30 HSPs)
chr1 (21-352)||(14484822-14485134)
chr1 (353-467)||(48752543-48752657)
chr1 (353-460)||(28217530-28217637)
chr1 (353-421)||(7062192-7062260)
chr1 (352-467)||(4156891-4157007)
chr1 (352-421)||(42180570-42180639)
chr1 (353-460)||(48871247-48871355)
chr1 (353-418)||(50893161-50893226)
chr1 (349-421)||(41834071-41834143)
chr1 (352-422)||(26552186-26552257)
chr1 (350-422)||(10227709-10227782)
chr1 (353-421)||(23346419-23346488)
chr1 (34-106)||(14470502-14470576)
chr1 (362-467)||(23346569-23346675)
chr1 (352-410)||(48871443-48871502)
chr1 (353-418)||(10227910-10227976)
chr1 (357-422)||(19059378-19059444)
chr1 (351-421)||(50892961-50893032)
chr1 (353-418)||(28217717-28217783)
chr1 (350-422)||(26551987-26552060)
chr1 (354-420)||(39669254-39669321)
chr1 (34-76)||(14507251-14507293)
chr1 (354-421)||(50904992-50905062)
chr1 (351-421)||(41833872-41833943)
chr1 (362-418)||(19059576-19059633)
chr1 (354-421)||(50905107-50905175)
chr1 (201-232)||(14470356-14470387)
chr1 (383-421)||(7062038-7062076)
chr1 (380-421)||(39669084-39669125)
chr1 (353-418)||(42180770-42180834)
[»] chr8 (12 HSPs)
chr8 (353-467)||(41539920-41540034)
chr8 (351-467)||(14193473-14193590)
chr8 (353-461)||(2814243-2814352)
chr8 (351-461)||(397005-397115)
chr8 (353-422)||(41539770-41539840)
chr8 (351-421)||(2814439-2814510)
chr8 (353-422)||(37994902-37994972)
chr8 (353-421)||(397200-397269)
chr8 (351-422)||(37994706-37994778)
chr8 (353-422)||(44036814-44036884)
chr8 (353-418)||(14193324-14193389)
chr8 (369-418)||(25101746-25101796)
[»] chr2 (23 HSPs)
chr2 (353-467)||(38085967-38086081)
chr2 (352-421)||(31470586-31470655)
chr2 (350-422)||(42028575-42028648)
chr2 (354-418)||(3671822-3671886)
chr2 (353-460)||(31470735-31470841)
chr2 (353-422)||(36059281-36059351)
chr2 (353-421)||(15332857-15332926)
chr2 (353-409)||(15330449-15330505)
chr2 (352-422)||(16115045-16115116)
chr2 (352-422)||(42028772-42028843)
chr2 (353-422)||(2059678-2059748)
chr2 (353-422)||(13280029-13280099)
chr2 (353-418)||(16115242-16115308)
chr2 (353-421)||(31860079-31860148)
chr2 (352-410)||(13279839-13279898)
chr2 (353-418)||(2059490-2059556)
chr2 (353-418)||(7317833-7317899)
chr2 (353-418)||(31860283-31860349)
chr2 (353-421)||(38086162-38086231)
chr2 (353-422)||(7317635-7317705)
chr2 (35-108)||(9066418-9066489)
chr2 (353-421)||(3672018-3672087)
chr2 (353-382)||(36059248-36059277)
[»] chr6 (6 HSPs)
chr6 (356-467)||(21389171-21389282)
chr6 (364-467)||(7789678-7789784)
chr6 (354-422)||(33022362-33022431)
chr6 (354-421)||(7789865-7789933)
chr6 (353-422)||(33022164-33022234)
chr6 (353-421)||(21389021-21389090)
[»] chr7 (12 HSPs)
chr7 (353-421)||(40521016-40521084)
chr7 (349-421)||(16979613-16979685)
chr7 (353-420)||(7298833-7298900)
chr7 (356-421)||(46567960-46568025)
chr7 (353-421)||(28949001-28949069)
chr7 (351-421)||(7298633-7298704)
chr7 (352-418)||(40521214-40521281)
chr7 (353-422)||(19805608-19805678)
chr7 (351-406)||(19804795-19804851)
chr7 (362-407)||(47478370-47478415)
chr7 (432-461)||(7298791-7298820)
chr7 (432-461)||(28948958-28948987)
[»] chr5 (33 HSPs)
chr5 (352-467)||(35454450-35454564)
chr5 (353-461)||(6518359-6518466)
chr5 (352-421)||(14388515-14388584)
chr5 (356-467)||(19897228-19897340)
chr5 (356-421)||(35454645-35454710)
chr5 (353-467)||(5146504-5146617)
chr5 (353-420)||(14069861-14069928)
chr5 (351-421)||(33377843-33377914)
chr5 (349-410)||(6518199-6518261)
chr5 (353-422)||(26534692-26534762)
chr5 (353-421)||(8489123-8489192)
chr5 (355-422)||(8323902-8323970)
chr5 (353-461)||(13823150-13823256)
chr5 (353-422)||(26534506-26534576)
chr5 (353-421)||(5146698-5146767)
chr5 (352-422)||(8323706-8323777)
chr5 (351-417)||(19898953-19899020)
chr5 (356-422)||(42630901-42630968)
chr5 (353-422)||(130254-130324)
chr5 (353-422)||(791592-791662)
chr5 (353-421)||(13823343-13823412)
chr5 (352-421)||(40881791-40881859)
chr5 (352-422)||(130442-130513)
chr5 (356-410)||(228990-229044)
chr5 (352-409)||(791810-791868)
chr5 (34-103)||(1718018-1718085)
chr5 (353-418)||(42630711-42630777)
chr5 (353-420)||(228717-228785)
chr5 (370-420)||(40882015-40882066)
chr5 (432-465)||(228922-228955)
chr5 (356-459)||(27319482-27319585)
chr5 (432-467)||(33377725-33377760)
chr5 (383-415)||(27319668-27319700)
[»] chr3 (15 HSPs)
chr3 (356-461)||(36635241-36635346)
chr3 (352-422)||(27073102-27073173)
chr3 (351-421)||(36635433-36635504)
chr3 (353-422)||(33214443-33214513)
chr3 (353-422)||(33214633-33214703)
chr3 (353-417)||(19580509-19580574)
chr3 (355-422)||(10598810-10598878)
chr3 (352-415)||(33219071-33219135)
chr3 (353-410)||(27072913-27072971)
chr3 (353-422)||(36274120-36274189)
chr3 (351-415)||(11650998-11651063)
chr3 (353-422)||(36274319-36274389)
chr3 (353-410)||(10599004-10599062)
chr3 (432-467)||(19580389-19580424)
chr3 (195-234)||(47924648-47924687)
[»] scaffold0214 (2 HSPs)
scaffold0214 (351-422)||(11821-11893)
scaffold0214 (352-418)||(11625-11692)
[»] scaffold0140 (1 HSPs)
scaffold0140 (353-420)||(15847-15915)
[»] chr4 (15 HSPs)
chr4 (352-422)||(3102734-3102805)
chr4 (353-422)||(40533963-40534033)
chr4 (353-422)||(40534157-40534227)
chr4 (353-421)||(11147014-11147083)
chr4 (353-421)||(18936676-18936744)
chr4 (353-422)||(3102540-3102610)
chr4 (353-418)||(5121005-5121071)
chr4 (354-422)||(13690216-13690285)
chr4 (351-422)||(9231578-9231650)
chr4 (353-418)||(18381507-18381573)
chr4 (353-421)||(18936872-18936941)
chr4 (353-421)||(37177821-37177890)
chr4 (356-417)||(11147224-11147285)
chr4 (353-417)||(37177624-37177688)
chr4 (432-461)||(11147175-11147204)
[»] scaffold0135 (1 HSPs)
scaffold0135 (351-422)||(37444-37516)
[»] scaffold0204 (1 HSPs)
scaffold0204 (352-410)||(17559-17617)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 352
Target Start/End: Complemental strand, 14485134 - 14484822
Alignment:
Q  21 actagagtattggaagcaattgccttgtttagagaattggaagcatcaaaatacatatggatccaagtgtttactttccta--ctttagttgccaaagga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||  |||||||||||||||||    
T  14485134 actagagtattggaagcaattgccttgtttagagaattggaagcatcaaaatacat--ggatccaagtgtttactttcctatactttagttgccaaagga 14485037  T
Q  119 gatcaggtggaatcactcttatggtacgtaaaaggtggtgtcatacctattcttgttagttatcactgatcgatgaatacagaggtgaaggaagagttaa 218  Q
    |||||||||||||||||||||  |   ||||||||||||||||||||||||| |||||||||||||||                ||||||||||||||||    
T  14485036 gatcaggtggaatcactcttaatg---gtaaaaggtggtgtcatacctattcatgttagttatcactg----------------gtgaaggaagagttaa 14484956  T
Q  219 taagattgcacaaatggtacccaattatttctactatctcaaaatgtttctaatagatttgttactttgtccaacaatgcaactgtcctattcaaagcaa 318  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14484955 taagattgcacaaatggtactcaattatttctactatctcaaaatgtttctaatagatttgttactttgtccaacaatgcaactgtcctattcaaagcaa 14484856  T
Q  319 taagccctatcttttttacaacaatgtttctaat 352  Q
    ||||||||||||||||||||||||||||||||||    
T  14484855 taagccctatcttttttacaacaatgtttctaat 14484822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 353 - 467
Target Start/End: Complemental strand, 48752657 - 48752543
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtcgnnnnnnnnncttttaaccatgattggtggt 452  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||          ||||||| |||||||||||||    
T  48752657 gagaaattcttgtgtatgaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcattttattttcttttaatcatgattggtggt 48752558  T
Q  453 ggtgaataccaactg 467  Q
    ||||||||| |||||    
T  48752557 ggtgaatactaactg 48752543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 353 - 460
Target Start/End: Original strand, 28217530 - 28217637
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtcgnnnnnnnnncttttaaccatgattggtggt 452  Q
    ||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||          |||||||||||||||||||||    
T  28217530 gagaaattcctgtgtaggaacgaacctaattatcattcttacaaacaacaaattaaaacatgacacgtcatttttttttcttttaaccatgattggtggt 28217629  T
Q  453 ggtgaata 460  Q
    ||||||||    
T  28217630 ggtgaata 28217637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 353 - 421
Target Start/End: Complemental strand, 7062260 - 7062192
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    |||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  7062260 gagaaatttttgtgtaggaacgaacctaactatcatttttacaaacaacaaattaaaatatgacacgtc 7062192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 352 - 467
Target Start/End: Original strand, 4156891 - 4157007
Alignment:
Q  352 tgagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtc-gnnnnnnnnncttttaaccatgattggtg 450  Q
    ||||||||||||||||||||| ||||||||||||||||||||| || || ||||||||| ||||||||||           |||||||||||||||||||    
T  4156891 tgagaaattcttgtgtaggaaggaacctaactatcattcttacaaataataaattaaaacatgacacgtcattttttttttcttttaaccatgattggtg 4156990  T
Q  451 gtggtgaataccaactg 467  Q
    ||||||||||| |||||    
T  4156991 gtggtgaatactaactg 4157007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 42180570 - 42180639
Alignment:
Q  352 tgagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    ||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||| ||||||||||    
T  42180570 tgagaaattcttgtgtaggaacgaacctaactagcattattacaaacaacaaattaaaacatgacacgtc 42180639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 353 - 460
Target Start/End: Original strand, 48871247 - 48871355
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtcgnnnnnnnnn-cttttaaccatgattggtgg 451  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||| ||           ||||||||||||||||||||    
T  48871247 gagaaattcttgtgtaggaacgaacctaactatcattcttacaaataacaaattaaaacatgacacatcattttttttttcttttaaccatgattggtgg 48871346  T
Q  452 tggtgaata 460  Q
    |||||||||    
T  48871347 tggtgaata 48871355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 50893226 - 50893161
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacac 418  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  50893226 gagaaattcttgtgtaggaacgaacctaactatcattattacaaacaacaaattaaaacatgacac 50893161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 349 - 421
Target Start/End: Complemental strand, 41834143 - 41834071
Alignment:
Q  349 taatgagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    ||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||||||| ||||||||||    
T  41834143 taatgagaaattcttgtgtaggaacgaacataactagcattattacaaacaacaaattaaaacatgacacgtc 41834071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 352 - 422
Target Start/End: Complemental strand, 26552257 - 26552186
Alignment:
Q  352 tgagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    |||||||||||||||||||| |||||||||| |||||| ||||| |||||||||||||||||||||||||||    
T  26552257 tgagaaattcttgtgtaggatcgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcg 26552186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 350 - 422
Target Start/End: Original strand, 10227709 - 10227782
Alignment:
Q  350 aatgagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    |||||||||||||||||||||||||||||||| ||| ||| ||||| ||||||||||||||| |||||||||||    
T  10227709 aatgagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcg 10227782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 421
Target Start/End: Original strand, 23346419 - 23346488
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||| ||||||||||    
T  23346419 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtc 23346488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 14470576 - 14470502
Alignment:
Q  34 aagcaattgccttgtttagagaattggaagcatcaaaatacat--atggatccaagtgtttactttcctacttta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||  ||| |||||||    
T  14470576 aagcaattgccttgtttagagaattggaagcatcaaaatacatgcatggatccaagtttttatgttcttacttta 14470502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 362 - 467
Target Start/End: Complemental strand, 23346675 - 23346569
Alignment:
Q  362 ttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtc-gnnnnnnnnncttttaaccatgattggtggtggtgaata 460  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||| |||           |||||||||||||||||||||||||||||    
T  23346675 ttgtgtaggaacgaacctaactatcattcttacaaacaataaattaaaacatgacatgtcattttttttttcttttaaccatgattggtggtggtgaata 23346576  T
Q  461 ccaactg 467  Q
    | |||||    
T  23346575 ctaactg 23346569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 48871502 - 48871443
Alignment:
Q  352 tgagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaa 410  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  48871502 tgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaa 48871443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 10227976 - 10227910
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacac 418  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||    
T  10227976 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacac 10227910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 357 - 422
Target Start/End: Original strand, 19059378 - 19059444
Alignment:
Q  357 aattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| |||||||||||    
T  19059378 aattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcg 19059444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 351 - 421
Target Start/End: Original strand, 50892961 - 50893032
Alignment:
Q  351 atgagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    |||||||||| |||||||| ||||||| |||| |||||||||||| ||||||||||||||| ||||||||||    
T  50892961 atgagaaatttttgtgtagcaacgaacttaacatatcattcttacaaacaacaaattaaaacatgacacgtc 50893032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 28217783 - 28217717
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacac 418  Q
    |||||||| ||||||||||||||||||||| |||||||||||| |||||||||| |||| |||||||    
T  28217783 gagaaattattgtgtaggaacgaacctaacatatcattcttacaaacaacaaatcaaaacatgacac 28217717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 422
Target Start/End: Original strand, 26551987 - 26552060
Alignment:
Q  350 aatgagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    |||| |||||||||||||||||||||| |||| ||||||| ||||| ||||| ||||||||||||| |||||||    
T  26551987 aatgtgaaattcttgtgtaggaacgaatctaacctatcatccttacaaacaaaaaattaaaatatggcacgtcg 26552060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 420
Target Start/End: Complemental strand, 39669321 - 39669254
Alignment:
Q  354 agaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgt 420  Q
    |||||||||||||||| ||||||| |||| |||||||||||| || |||||||||||| |||||||||    
T  39669321 agaaattcttgtgtagaaacgaacttaacatatcattcttacaaagaacaaattaaaacatgacacgt 39669254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 14507293 - 14507251
Alignment:
Q  34 aagcaattgccttgtttagagaattggaagcatcaaaatacat 76  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  14507293 aagcaattgccttgtttagagaattggtagcatcaaaatacat 14507251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 421
Target Start/End: Original strand, 50904992 - 50905062
Alignment:
Q  354 agaaattcttgtgtaggaacgaacctaa---ctatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    ||||||||||||||||||||||||||||    ||||||| |||| |||||||| |||||| ||||||||||    
T  50904992 agaaattcttgtgtaggaacgaacctaatatatatcatttttacaaacaacaagttaaaacatgacacgtc 50905062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 421
Target Start/End: Original strand, 41833872 - 41833943
Alignment:
Q  351 atgagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    ||||||||||||||| ||| |||||| ||||  ||||||||||||  |||||||||||||| ||||||||||    
T  41833872 atgagaaattcttgtatagaaacgaatctaatatatcattcttacacacaacaaattaaaacatgacacgtc 41833943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 418
Target Start/End: Complemental strand, 19059633 - 19059576
Alignment:
Q  362 ttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacac 418  Q
    ||||||||||||||||||||| |||||| ||||  || ||||||||||||||||||||    
T  19059633 ttgtgtaggaacgaacctaacctatcatccttataaagaacaaattaaaatatgacac 19059576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 421
Target Start/End: Complemental strand, 50905175 - 50905107
Alignment:
Q  354 agaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    ||||||| |||||||  |||||| ||||| |||||||||||| ||||||||||||||| |||| |||||    
T  50905175 agaaatttttgtgtaaaaacgaatctaacatatcattcttacaaacaacaaattaaaacatgatacgtc 50905107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 232
Target Start/End: Complemental strand, 14470387 - 14470356
Alignment:
Q  201 aggtgaaggaagagttaataagattgcacaaa 232  Q
    ||||||||||||||||||||||||||||||||    
T  14470387 aggtgaaggaagagttaataagattgcacaaa 14470356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 421
Target Start/End: Original strand, 7062038 - 7062076
Alignment:
Q  383 tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  7062038 tatcattcttacaaacaacaaattaaaacatgacacgtc 7062076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 421
Target Start/End: Original strand, 39669084 - 39669125
Alignment:
Q  380 aactatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    ||||||||||||||| ||||| |||||||||||||| |||||    
T  39669084 aactatcattcttacaaacaataaattaaaatatgatacgtc 39669125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 42180834 - 42180770
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacac 418  Q
    ||||||||||||| | | |||||| |||| |||||||||||| ||||||||| ||||| |||||||    
T  42180834 gagaaattcttgtat-gaaacgaatctaaatatcattcttacaaacaacaaactaaaacatgacac 42180770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 353 - 467
Target Start/End: Complemental strand, 41540034 - 41539920
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtcgnnnnnnnnncttttaaccatgattggtggt 452  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||         ||||||| |||||||||||||    
T  41540034 gagaaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcgttttattttcttttaatcatgattggtggt 41539935  T
Q  453 ggtgaataccaactg 467  Q
    ||||||||| |||||    
T  41539934 ggtgaatactaactg 41539920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 351 - 467
Target Start/End: Complemental strand, 14193590 - 14193473
Alignment:
Q  351 atgagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtc-gnnnnnnnnncttttaaccatgattggt 449  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||           ||||||||||||||||||    
T  14193590 atgagaaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcatttttttcttcttttaaccatgattggt 14193491  T
Q  450 ggtggtgaataccaactg 467  Q
    |||||||||||| |||||    
T  14193490 ggtggtgaatactaactg 14193473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 353 - 461
Target Start/End: Original strand, 2814243 - 2814352
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtcg-nnnnnnnnncttttaaccatgattggtgg 451  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||          ||||||||||||||||||||    
T  2814243 gagaaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaatcatgacacgtcgttttttttttcttttaaccatgattggtgg 2814342  T
Q  452 tggtgaatac 461  Q
    ||||||||||    
T  2814343 tggtgaatac 2814352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 351 - 461
Target Start/End: Original strand, 397005 - 397115
Alignment:
Q  351 atgagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtcgnnnnnnnnncttttaaccatgattggtg 450  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||| || |||||| |         |||||||||||||||||||    
T  397005 atgagaaattcttgtgcaggaacgaacctaactatcattcttacaaacaataaattaaaacataacacgttgtttttttttcttttaaccatgattggtg 397104  T
Q  451 gtggtgaatac 461  Q
    |||||||||||    
T  397105 gtggtgaatac 397115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 353 - 422
Target Start/End: Original strand, 41539770 - 41539840
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  41539770 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaatatgacacgtcg 41539840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 351 - 421
Target Start/End: Complemental strand, 2814510 - 2814439
Alignment:
Q  351 atgagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||    
T  2814510 atgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 2814439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 422
Target Start/End: Complemental strand, 37994972 - 37994902
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||| |||||||||||    
T  37994972 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacgtcg 37994902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 353 - 421
Target Start/End: Complemental strand, 397269 - 397200
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    ||||||||||||||||| |||||||||||| |||||||||||  ||||||||||||||| ||||||||||    
T  397269 gagaaattcttgtgtagaaacgaacctaacatatcattcttataaacaacaaattaaaacatgacacgtc 397200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 37994706 - 37994778
Alignment:
Q  351 atgagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||| |||| ||||||    
T  37994706 atgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgatacgtcg 37994778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 353 - 422
Target Start/End: Original strand, 44036814 - 44036884
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||| |||||||| ||||||||||| |||||| ||||| ||||||||||| ||| |||||||||||    
T  44036814 gagaaattcatgtgtagggacgaacctaacctatcatccttacaaacaacaaattcaaacatgacacgtcg 44036884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 418
Target Start/End: Original strand, 14193324 - 14193389
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacac 418  Q
    |||||||| |||| |||||||||||||||| ||| ||| |||| ||||||||||||||| |||||||    
T  14193324 gagaaatttttgt-taggaacgaacctaacatattatttttacaaacaacaaattaaaacatgacac 14193389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 25101746 - 25101796
Alignment:
Q  369 ggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacac 418  Q
    |||||||||||||| |||||||||| | ||||||||| |||||||||||||    
T  25101746 ggaacgaacctaacctatcattcttgcaaacaacaaaataaaatatgacac 25101796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 353 - 467
Target Start/End: Original strand, 38085967 - 38086081
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtcgnnnnnnnnncttttaaccatgattggtggt 452  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||         |||||||||||||||||||||    
T  38085967 gagaaattcttgtgtaggaacgaaactaactatcattcttacaaacaacaaattaaaacatgacacgtcgttttattttcttttaaccatgattggtggt 38086066  T
Q  453 ggtgaataccaactg 467  Q
    ||||||||| |||||    
T  38086067 ggtgaatactaactg 38086081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 31470586 - 31470655
Alignment:
Q  352 tgagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||    
T  31470586 tgagaaattcttgtgtaggaacgaacctaactatcatttttacaaacaacaaattaaaacatgacacgtc 31470655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 350 - 422
Target Start/End: Original strand, 42028575 - 42028648
Alignment:
Q  350 aatgagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||    
T  42028575 aatgagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgacacgtcg 42028648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 354 - 418
Target Start/End: Original strand, 3671822 - 3671886
Alignment:
Q  354 agaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacac 418  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  3671822 agaaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacac 3671886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 353 - 460
Target Start/End: Complemental strand, 31470841 - 31470735
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtcgnnnnnnnnncttttaaccatgattggtggt 452  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||| ||          |||||||||||||||||||||    
T  31470841 gagaaatttttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaataatgacacatc-attttttttcttttaaccatgattggtggt 31470743  T
Q  453 ggtgaata 460  Q
    ||||||||    
T  31470742 ggtgaata 31470735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 353 - 422
Target Start/End: Complemental strand, 36059351 - 36059281
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    |||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| |||||||||||    
T  36059351 gagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcg 36059281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 421
Target Start/End: Complemental strand, 15332926 - 15332857
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||| ||||||||||    
T  15332926 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtc 15332857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 353 - 409
Target Start/End: Original strand, 15330449 - 15330505
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaa 409  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  15330449 gagaaattcttgtgtaggaacgaacctaactatcattcttacaaacaataaattaaa 15330505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 352 - 422
Target Start/End: Original strand, 16115045 - 16115116
Alignment:
Q  352 tgagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||| ||||||| ||||||||||||| |||||| ||||| |||||||||||||||||||||||||||    
T  16115045 tgagaaatttttgtgtaagaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcg 16115116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 352 - 422
Target Start/End: Complemental strand, 42028843 - 42028772
Alignment:
Q  352 tgagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||| ||||||    
T  42028843 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcg 42028772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 422
Target Start/End: Complemental strand, 2059748 - 2059678
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    |||||||| |||||| |||||||||||||| |||||| ||||| |||||||||||||||||||||||||||    
T  2059748 gagaaattattgtgttggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcg 2059678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 422
Target Start/End: Complemental strand, 13280099 - 13280029
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||| ||||||    
T  13280099 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcg 13280029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 16115308 - 16115242
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacac 418  Q
    |||||||| ||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||    
T  16115308 gagaaatttttgtgtaggaacgaacctaacctatcattcttacaaacaacaaactaaaatatgacac 16115242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 353 - 421
Target Start/End: Original strand, 31860079 - 31860148
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    ||||||||||||||||||||||||||||| ||||||| ||||  ||||||||||||||| ||||||||||    
T  31860079 gagaaattcttgtgtaggaacgaacctaacctatcatccttataaacaacaaattaaaacatgacacgtc 31860148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 352 - 410
Target Start/End: Original strand, 13279839 - 13279898
Alignment:
Q  352 tgagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaa 410  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||    
T  13279839 tgagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaa 13279898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 418
Target Start/End: Original strand, 2059490 - 2059556
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacac 418  Q
    |||||||||||| |||||||||||||||| ||||||| ||||| ||||||||| |||||||||||||    
T  2059490 gagaaattcttgggtaggaacgaacctaacctatcatccttacaaacaacaaactaaaatatgacac 2059556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 7317899 - 7317833
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacac 418  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||| |||||||    
T  7317899 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacac 7317833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 31860349 - 31860283
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacac 418  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||| ||||||||||||||| |||||||    
T  31860349 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacac 31860283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 421
Target Start/End: Complemental strand, 38086231 - 38086162
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    |||||||| ||||||||| || |||||||| |||||||||||| |||||||||||||||||||| |||||    
T  38086231 gagaaatttttgtgtagggacaaacctaacatatcattcttacaaacaacaaattaaaatatgatacgtc 38086162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 353 - 422
Target Start/End: Original strand, 7317635 - 7317705
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    |||||| | ||||||||||||||||||||| |||||| ||||| ||||||||| ||||| |||||||||||    
T  7317635 gagaaacttttgtgtaggaacgaacctaacctatcatccttactaacaacaaactaaaacatgacacgtcg 7317705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 9066418 - 9066489
Alignment:
Q  35 agcaattgccttgtttagagaattggaagcatcaaaatacatatggatccaagtgtttactttcctactttagt 108  Q
    |||||||||||||||||||||||| || |||| ||||| |  |||||| |||||||| |  |||||||||||||    
T  9066418 agcaattgccttgtttagagaattagaggcattaaaatgc--atggattcaagtgttaatgttcctactttagt 9066489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 421
Target Start/End: Complemental strand, 3672087 - 3672018
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    ||||||||||| || ||||||||| ||||  ||||||| |||| || ||||||||||||||| |||||||    
T  3672087 gagaaattcttatggaggaacgaatctaatatatcatttttacaaataacaaattaaaatataacacgtc 3672018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 382
Target Start/End: Original strand, 36059248 - 36059277
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac 382  Q
    ||||||||||||||||||||||||||||||    
T  36059248 gagaaattcttgtgtaggaacgaacctaac 36059277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 9e-31; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 356 - 467
Target Start/End: Complemental strand, 21389282 - 21389171
Alignment:
Q  356 aaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtcgnnnnnnnnncttttaaccatgattggtggtggt 455  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||          ||||||||||||||||||||||||    
T  21389282 aaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcatttttttttcttttaaccatgattggtggtggt 21389183  T
Q  456 gaataccaactg 467  Q
    |||||| |||||    
T  21389182 gaatactaactg 21389171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 364 - 467
Target Start/End: Original strand, 7789678 - 7789784
Alignment:
Q  364 gtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtc---gnnnnnnnnncttttaaccatgattggtggtggtgaata 460  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||   |         |||||||||||||||||||||||||||||    
T  7789678 gtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacatgtcattgtttttttttcttttaaccatgattggtggtggtgaata 7789777  T
Q  461 ccaactg 467  Q
    | |||||    
T  7789778 ctaactg 7789784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 354 - 422
Target Start/End: Complemental strand, 33022431 - 33022362
Alignment:
Q  354 agaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| |||||||||||    
T  33022431 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcg 33022362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 354 - 421
Target Start/End: Complemental strand, 7789933 - 7789865
Alignment:
Q  354 agaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    ||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| ||||||||||    
T  7789933 agaaattcttgtgtaggaatgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 7789865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 422
Target Start/End: Original strand, 33022164 - 33022234
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    |||||||| ||||||||||||||||||||| |||||| ||||| ||||||||||||||| |||||||||||    
T  33022164 gagaaattattgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcg 33022234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 353 - 421
Target Start/End: Original strand, 21389021 - 21389090
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    ||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| |||| |||||    
T  21389021 gagaaattcttctgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgatacgtc 21389090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 353 - 421
Target Start/End: Original strand, 40521016 - 40521084
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40521016 gagaaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaatatgacacgtc 40521084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 349 - 421
Target Start/End: Complemental strand, 16979685 - 16979613
Alignment:
Q  349 taatgagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| ||||||||||    
T  16979685 taatgagaaattcttgtgtaggaacgaatctaactatcattcttacaaataacaaattaaaacatgacacgtc 16979613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 353 - 420
Target Start/End: Complemental strand, 7298900 - 7298833
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgt 420  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||    
T  7298900 gagaaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacataacacgt 7298833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 356 - 421
Target Start/End: Original strand, 46567960 - 46568025
Alignment:
Q  356 aaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||    
T  46567960 aaattcttgtgtaggaacgaacttaactatcattcttacaaacaacaaattaaaacatgacacgtc 46568025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 353 - 421
Target Start/End: Complemental strand, 28949069 - 28949001
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||    
T  28949069 gagaaatttttgtgtaggaacgaacctaactatcattcttacaaacaataaattaaaacatgacacgtc 28949001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 421
Target Start/End: Original strand, 7298633 - 7298704
Alignment:
Q  351 atgagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    |||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||| ||||||||||    
T  7298633 atgagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtc 7298704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 352 - 418
Target Start/End: Complemental strand, 40521281 - 40521214
Alignment:
Q  352 tgagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacac 418  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||    
T  40521281 tgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 40521214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 353 - 422
Target Start/End: Complemental strand, 19805678 - 19805608
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||||||||||||||||||| ||| ||||||| ||||  || |||||||||||| |||||||||||    
T  19805678 gagaaattcttgtgtaggaacgaacttaacctatcatccttataaataacaaattaaaacatgacacgtcg 19805608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 19804795 - 19804851
Alignment:
Q  351 atgagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaatt 406  Q
    ||||||||||||||||||||||||||||||| |||| || ||||| |||||||||||    
T  19804795 atgagaaattcttgtgtaggaacgaacctaacctattatccttacaaacaacaaatt 19804851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 362 - 407
Target Start/End: Original strand, 47478370 - 47478415
Alignment:
Q  362 ttgtgtaggaacgaacctaactatcattcttacgaacaacaaatta 407  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||||    
T  47478370 ttgtgtagaaacgaacttaactatcattcttacaaacaacaaatta 47478415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 461
Target Start/End: Complemental strand, 7298820 - 7298791
Alignment:
Q  432 cttttaaccatgattggtggtggtgaatac 461  Q
    ||||||||||||||||||||||||||||||    
T  7298820 cttttaaccatgattggtggtggtgaatac 7298791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 461
Target Start/End: Complemental strand, 28948987 - 28948958
Alignment:
Q  432 cttttaaccatgattggtggtggtgaatac 461  Q
    ||||||||||||||||||||||||||||||    
T  28948987 cttttaaccatgattggtggtggtgaatac 28948958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 352 - 467
Target Start/End: Original strand, 35454450 - 35454564
Alignment:
Q  352 tgagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtcgnnnnnnnnncttttaaccatgattggtgg 451  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||          ||||||||||||||||||||    
T  35454450 tgagaaattcttgtgtatgaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtc-attttttttcttttaaccatgattggtgg 35454548  T
Q  452 tggtgaataccaactg 467  Q
    |||||||||| |||||    
T  35454549 tggtgaatactaactg 35454564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 353 - 461
Target Start/End: Complemental strand, 6518466 - 6518359
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtcgnnnnnnnnncttttaaccatgattggtggt 452  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| || ||          |||||||||||||||||||||    
T  6518466 gagaaattcttgtgtagtaacgaacctaactatcattcttacaaacaacaaattaaaatatgatacatc-atttttttccttttaaccatgattggtggt 6518368  T
Q  453 ggtgaatac 461  Q
    |||||||||    
T  6518367 ggtgaatac 6518359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 352 - 421
Target Start/End: Complemental strand, 14388584 - 14388515
Alignment:
Q  352 tgagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||    
T  14388584 tgagaaattcttgtgtaggaacaaacctaactatcattcttacaaacaacaaattaaaacatgacacgtc 14388515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 356 - 467
Target Start/End: Original strand, 19897228 - 19897340
Alignment:
Q  356 aaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtc-gnnnnnnnnncttttaaccatgattggtggtgg 454  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||           |||||||||||||||||||||||    
T  19897228 aaattattgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtcatattttttctcttttaaccatgattggtggtgg 19897327  T
Q  455 tgaataccaactg 467  Q
    ||||||| |||||    
T  19897328 tgaatactaactg 19897340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 356 - 421
Target Start/End: Complemental strand, 35454710 - 35454645
Alignment:
Q  356 aaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  35454710 aaattcttgtgtaggaacgaacctaactatcattcttacaaacaacaaattaaaacatgacacgtc 35454645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 353 - 467
Target Start/End: Original strand, 5146504 - 5146617
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtcgnnnnnnnnncttttaaccatgattggtggt 452  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||           |||||||||||||||||||||    
T  5146504 gagaaattattgtgtaggaacgaacctaactatcattcttacaaacaataaattaaaacatgacacgt-tattttttttcttttaaccatgattggtggt 5146602  T
Q  453 ggtgaataccaactg 467  Q
    ||||||||| |||||    
T  5146603 ggtgaatactaactg 5146617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 353 - 420
Target Start/End: Original strand, 14069861 - 14069928
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgt 420  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||    
T  14069861 gagaaattcttgtgtaggaacgaacctaactatcattcttataaacaacaaattaaaacatgacacgt 14069928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 421
Target Start/End: Complemental strand, 33377914 - 33377843
Alignment:
Q  351 atgagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    ||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||    
T  33377914 atgagaaattcttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 33377843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 349 - 410
Target Start/End: Original strand, 6518199 - 6518261
Alignment:
Q  349 taatgagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaa 410  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  6518199 taatgagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaa 6518261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 353 - 422
Target Start/End: Complemental strand, 26534762 - 26534692
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||||    
T  26534762 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcg 26534692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 421
Target Start/End: Original strand, 8489123 - 8489192
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    ||||||||||||||||||||| || ||||| |||||||||||| ||||||||||||||||||||||||||    
T  8489123 gagaaattcttgtgtaggaacaaatctaacatatcattcttacaaacaacaaattaaaatatgacacgtc 8489192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 355 - 422
Target Start/End: Complemental strand, 8323970 - 8323902
Alignment:
Q  355 gaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| |||||||||||    
T  8323970 gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcg 8323902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 461
Target Start/End: Original strand, 13823150 - 13823256
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtcgnnnnnnnnncttttaaccatgattggtggt 452  Q
    |||||||||||||||||||||||||||||||||||||| ||  ||||| ||| ||||| |||||||||           |||||||||||||||||||||    
T  13823150 gagaaattcttgtgtaggaacgaacctaactatcattcgtataaacaataaactaaaacatgacacgt--attttttttcttttaaccatgattggtggt 13823247  T
Q  453 ggtgaatac 461  Q
    |||||||||    
T  13823248 ggtgaatac 13823256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 422
Target Start/End: Original strand, 26534506 - 26534576
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||||||||||||||||||||||| ||||||  ||||| ||||||||||||||| |||||||||||    
T  26534506 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcg 26534576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 353 - 421
Target Start/End: Complemental strand, 5146767 - 5146698
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    ||||||||||||||||| |||||||||||  |||||||||||| ||||||||||||||| ||||||||||    
T  5146767 gagaaattcttgtgtagaaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtc 5146698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 352 - 422
Target Start/End: Original strand, 8323706 - 8323777
Alignment:
Q  352 tgagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    |||||||||||||||||||||||||||||| |||||||  |||| ||||| ||||||||| |||||||||||    
T  8323706 tgagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaataaattaaaacatgacacgtcg 8323777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 351 - 417
Target Start/End: Complemental strand, 19899020 - 19898953
Alignment:
Q  351 atgagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgaca 417  Q
    |||||||||||||||||||||||||||||||| ||||||| |||  ||||||||||||||| ||||||    
T  19899020 atgagaaattcttgtgtaggaacgaacctaacatatcatttttataaacaacaaattaaaacatgaca 19898953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 356 - 422
Target Start/End: Complemental strand, 42630968 - 42630901
Alignment:
Q  356 aaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||||||||| ||||||||||| |||||| ||||| ||||| |||||||||||||||||||||    
T  42630968 aaattcttgtgtaggcacgaacctaacctatcatccttacaaacaataaattaaaatatgacacgtcg 42630901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 422
Target Start/End: Original strand, 130254 - 130324
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||||||||||||||||||||||| || |||  ||||| ||||||||||||||| |||||||||||    
T  130254 gagaaattcttgtgtaggaacgaacctaacctgtcaaccttacaaacaacaaattaaaacatgacacgtcg 130324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 422
Target Start/End: Original strand, 791592 - 791662
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    |||||||| |||||||||||||||||||| ||| ||| ||||| ||||||||||||||| |||||||||||    
T  791592 gagaaatttttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcg 791662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 421
Target Start/End: Complemental strand, 13823412 - 13823343
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    ||||||||||||||||||||||||| |||| ||||||| |||| || |||||||||||| ||||||||||    
T  13823412 gagaaattcttgtgtaggaacgaacttaacatatcatttttacaaataacaaattaaaacatgacacgtc 13823343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 40881791 - 40881859
Alignment:
Q  352 tgagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    ||||||||| ||||||||||||||||||||| || |||||||| ||||| ||||||||| ||||||||||    
T  40881791 tgagaaattgttgtgtaggaacgaacctaac-attattcttacaaacaataaattaaaacatgacacgtc 40881859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 422
Target Start/End: Complemental strand, 130513 - 130442
Alignment:
Q  352 tgagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    |||||||||||| ||||| |||||||||||| |||||| ||||| ||||||||||||||| || ||||||||    
T  130513 tgagaaattcttttgtagtaacgaacctaacctatcatccttacaaacaacaaattaaaacataacacgtcg 130442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 356 - 410
Target Start/End: Complemental strand, 229044 - 228990
Alignment:
Q  356 aaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaa 410  Q
    ||||| |||||||| ||||||| |||||||||||||||| |||||||||||||||    
T  229044 aaatttttgtgtagaaacgaacataactatcattcttacaaacaacaaattaaaa 228990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 409
Target Start/End: Complemental strand, 791868 - 791810
Alignment:
Q  352 tgagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaa 409  Q
    |||||||||||||||||||||||||||||| |||||||  |||| ||||||||||||||    
T  791868 tgagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaa 791810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 1718018 - 1718085
Alignment:
Q  34 aagcaattgccttgtttagagaattggaagcatcaaaatacatatggatccaagtgtttactttcctact 103  Q
    |||||||||||||||||||| ||||||| |||| |||||||  |||||||||||||||||  ||||||||    
T  1718018 aagcaattgccttgtttagaaaattggaggcattaaaatac--atggatccaagtgtttatgttcctact 1718085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 353 - 418
Target Start/End: Original strand, 42630711 - 42630777
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacac 418  Q
    |||||||||||||||| |||||||||||| ||||||| ||||| ||||||||| ||||| |||||||    
T  42630711 gagaaattcttgtgtatgaacgaacctaacctatcatccttacaaacaacaaactaaaacatgacac 42630777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 420
Target Start/End: Original strand, 228717 - 228785
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgt 420  Q
    ||||||||  |||||||||||||||||||| |||||||||||  ||||| ||||||||| |||||||||    
T  228717 gagaaattactgtgtaggaacgaacctaacatatcattcttataaacaataaattaaaacatgacacgt 228785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 420
Target Start/End: Complemental strand, 40882066 - 40882015
Alignment:
Q  370 gaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgt 420  Q
    ||||||| ||||| |||||||||||| |||||||||||||||||||||||||    
T  40882066 gaacgaatctaacatatcattcttacaaacaacaaattaaaatatgacacgt 40882015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 465
Target Start/End: Complemental strand, 228955 - 228922
Alignment:
Q  432 cttttaaccatgattggtggtggtgaataccaac 465  Q
    ||||||||||||||||||||||||||||||||||    
T  228955 cttttaaccatgattggtggtggtgaataccaac 228922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 459
Target Start/End: Original strand, 27319482 - 27319585
Alignment:
Q  356 aaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtcgnnnnnnnnncttttaaccatgattggtggtggt 455  Q
    ||||| |||||||| || |||| |||||||||||||||| || || ||||||||| |||| ||||           ||||||||||||||||||||||||    
T  27319482 aaatttttgtgtagtaatgaacttaactatcattcttacaaataataaattaaaacatgatacgttattttattttcttttaaccatgattggtggtggt 27319581  T
Q  456 gaat 459  Q
    ||||    
T  27319582 gaat 27319585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 467
Target Start/End: Original strand, 33377725 - 33377760
Alignment:
Q  432 cttttaaccatgattggtggtggtgaataccaactg 467  Q
    |||||||||||||||||||||||||||||| |||||    
T  33377725 cttttaaccatgattggtggtggtgaatactaactg 33377760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 27319700 - 27319668
Alignment:
Q  383 tatcattcttacgaacaacaaattaaaatatga 415  Q
    |||||||||||| ||||||||||||||||||||    
T  27319700 tatcattcttacaaacaacaaattaaaatatga 27319668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 356 - 461
Target Start/End: Original strand, 36635241 - 36635346
Alignment:
Q  356 aaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtcgnnnnnnnnncttttaaccatgattggtggtggt 455  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||           ||||||||||||||||||||||||    
T  36635241 aaattcttgtgtaggaacgaacctaactatcattgttacaaacaacaaattaaaacatgacacgtattttttttttcttttaaccatgattggtggtggt 36635340  T
Q  456 gaatac 461  Q
    ||||||    
T  36635341 gaatac 36635346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 352 - 422
Target Start/End: Complemental strand, 27073173 - 27073102
Alignment:
Q  352 tgagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||||    
T  27073173 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcg 27073102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 421
Target Start/End: Complemental strand, 36635504 - 36635433
Alignment:
Q  351 atgagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    |||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||| ||||||||||    
T  36635504 atgagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtc 36635433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 353 - 422
Target Start/End: Original strand, 33214443 - 33214513
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||||    
T  33214443 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcg 33214513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 422
Target Start/End: Complemental strand, 33214703 - 33214633
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||||||||||||||||||||||| ||||||  ||||| ||||||||||||||| |||||||||||    
T  33214703 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcg 33214633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 353 - 417
Target Start/End: Complemental strand, 19580574 - 19580509
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgaca 417  Q
    ||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||| ||||||    
T  19580574 gagaaattcttgtataggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgaca 19580509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 422
Target Start/End: Original strand, 10598810 - 10598878
Alignment:
Q  355 gaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||||||||||||||||||||| |||||||  |||| ||||||||||||||| |||||||||||    
T  10598810 gaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaaacatgacacgtcg 10598878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 352 - 415
Target Start/End: Original strand, 33219071 - 33219135
Alignment:
Q  352 tgagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatga 415  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| ||||    
T  33219071 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatga 33219135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 410
Target Start/End: Original strand, 27072913 - 27072971
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaa 410  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||    
T  27072913 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaa 27072971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 422
Target Start/End: Original strand, 36274120 - 36274189
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    |||||||| ||||||||||||||||||||| |||||| ||||| ||||||||||||||| |||||||||||    
T  36274120 gagaaatt-ttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcg 36274189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 415
Target Start/End: Original strand, 11650998 - 11651063
Alignment:
Q  351 atgagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatga 415  Q
    ||||||||||||||| || ||||||||||||| |||||||||||| |||||||| |||||||||||    
T  11650998 atgagaaattcttgtttatgaacgaacctaacatatcattcttacaaacaacaatttaaaatatga 11651063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 353 - 422
Target Start/End: Complemental strand, 36274389 - 36274319
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||||| |||||||||||| ||||| ||||||  |||| ||||||||||||||| |||||||||||    
T  36274389 gagaaattcttatgtaggaacgaatctaacctatcatctttacaaacaacaaattaaaacatgacacgtcg 36274319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 410
Target Start/End: Complemental strand, 10599062 - 10599004
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaa 410  Q
    ||||||||||||||| | |||||||||||| |||||| ||||| |||||||||||||||    
T  10599062 gagaaattcttgtgtggaaacgaacctaacatatcatccttacaaacaacaaattaaaa 10599004  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 467
Target Start/End: Original strand, 19580389 - 19580424
Alignment:
Q  432 cttttaaccatgattggtggtggtgaataccaactg 467  Q
    |||||||||||||||||||||||||||||| |||||    
T  19580389 cttttaaccatgattggtggtggtgaatactaactg 19580424  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 47924687 - 47924648
Alignment:
Q  195 atacagaggtgaaggaagagttaataagattgcacaaatg 234  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  47924687 atacagaggtgatggaaaagttaataagattgcacaaatg 47924648  T

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Target: scaffold0214 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 11893 - 11821
Alignment:
Q  351 atgagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||||    
T  11893 atgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcg 11821  T

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Target: scaffold0214; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 352 - 418
Target Start/End: Original strand, 11625 - 11692
Alignment:
Q  352 tgagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacac 418  Q
    |||| |||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||    
T  11625 tgagtaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacac 11692  T

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Target: scaffold0140 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 353 - 420
Target Start/End: Original strand, 15847 - 15915
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgt 420  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||    
T  15847 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgt 15915  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 352 - 422
Target Start/End: Complemental strand, 3102805 - 3102734
Alignment:
Q  352 tgagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||||    
T  3102805 tgagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcg 3102734  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 353 - 422
Target Start/End: Original strand, 40533963 - 40534033
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| ||||||    
T  40533963 gagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgatacgtcg 40534033  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 353 - 422
Target Start/End: Complemental strand, 40534227 - 40534157
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||||    
T  40534227 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcg 40534157  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 421
Target Start/End: Original strand, 11147014 - 11147083
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||| ||||||||||    
T  11147014 gagaaattcttgtgtaggaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtc 11147083  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 353 - 421
Target Start/End: Original strand, 18936676 - 18936744
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    |||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||| |||| |||||    
T  18936676 gagaaattcttgtgtatgaacgaacataactatcattcttacaaacaacaaattaaaacatgatacgtc 18936744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 422
Target Start/End: Original strand, 3102540 - 3102610
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||| ||||||    
T  3102540 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcg 3102610  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 5121071 - 5121005
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacac 418  Q
    ||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |||||||    
T  5121071 gagaaattcttgtgtaggaacaaacctaacatatcattcttacaaacaacaaattaaaacatgacac 5121005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 354 - 422
Target Start/End: Original strand, 13690216 - 13690285
Alignment:
Q  354 agaaattcttgtgtaggaacgaacctaa-ctatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    |||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||| ||||||    
T  13690216 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcg 13690285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 9231578 - 9231650
Alignment:
Q  351 atgagaaattcttgtgtaggaacgaaccta-actatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||||||||||||||||||||||||  ||| ||| ||||| ||||||||||||||| |||||||||||    
T  9231578 atgagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcg 9231650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 18381573 - 18381507
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacac 418  Q
    |||||||||||||||||||||||||||||| | |||||||||| | ||||||||||||| |||||||    
T  18381573 gagaaattcttgtgtaggaacgaacctaacatttcattcttacaagcaacaaattaaaacatgacac 18381507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 421
Target Start/End: Complemental strand, 18936941 - 18936872
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    ||||||||||||| |||||||||||||||  |||||||||||| ||||| ||||||||| ||||||||||    
T  18936941 gagaaattcttgtctaggaacgaacctaatatatcattcttacaaacaataaattaaaacatgacacgtc 18936872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 421
Target Start/End: Complemental strand, 37177890 - 37177821
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacgaacaacaaattaaaatatgacacgtc 421  Q
    ||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||||||| |||| |||||    
T  37177890 gagaaattcttgtctaggaacgaacataacatatcattcttacaaacaacaaattaaaacatgatacgtc 37177821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 417
Target Start/End: Complemental strand, 11147285 - 11147224
Alignment:
Q  356 aaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgaca 417  Q
    |||||||| ||||| |||||| |||||||| |||||||| ||||| ||||||||||||||||    
T  11147285 aaattcttatgtagaaacgaatctaactattattcttacaaacaataaattaaaatatgaca 11147224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 417
Target Start/End: Original strand, 37177624 - 37177688
Alignment:
Q  353 gagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaatatgaca 417  Q
    ||||||||||| ||||||||||||   || |||||||||||| ||||| ||||||||||||||||    
T  37177624 gagaaattcttctgtaggaacgaattcaattatcattcttacaaacaataaattaaaatatgaca 37177688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 461
Target Start/End: Complemental strand, 11147204 - 11147175
Alignment:
Q  432 cttttaaccatgattggtggtggtgaatac 461  Q
    ||||||||||||||||||||||||||||||    
T  11147204 cttttaaccatgattggtggtggtgaatac 11147175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 422
Target Start/End: Original strand, 37444 - 37516
Alignment:
Q  351 atgagaaattcttgtgtaggaacgaaccta-actatcattcttacgaacaacaaattaaaatatgacacgtcg 422  Q
    ||||||||||||||||||||||||||||||  ||| ||| ||||| ||||||||||||||| |||||||||||    
T  37444 atgagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcg 37516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 17617 - 17559
Alignment:
Q  352 tgagaaattcttgtgtaggaacgaacctaactatcattcttacgaacaacaaattaaaa 410  Q
    ||||| ||||| |||||||||||||| ||| ||||||| |||| ||||| |||||||||    
T  17617 tgagatattctcgtgtaggaacgaacgtaagtatcatttttacaaacaataaattaaaa 17559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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