View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4567_low_3 (Length: 375)
Name: NF4567_low_3
Description: NF4567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4567_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 7740367 - 7740716
Alignment:
| Q |
18 |
agataaagcagcaaaaattggatt-gtggcacccactcgccgccaatgtgattatttagtttaagatgttttggtgttgaccctttagttctgaaaggaa |
116 |
Q |
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| T |
7740367 |
agataaagcagcaaaaattggatttgtggcacccactcgccgccaatgtgattatttagtttaagatgttttggtgttgaccctttagttctgaaaggaa |
7740466 |
T |
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| Q |
117 |
atggatcatagttatctggagttccatccaagataaataaagtttggacaaaaat-gtttcattcaaaaatagaattcaagttctccttcacaatttatc |
215 |
Q |
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| T |
7740467 |
atggatcatagttatctggagttccatccaagataaataaagtttggtcaaaaattgtttcattcaaaaatagaattcaagttctccttcacaatttacc |
7740566 |
T |
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| Q |
216 |
tttgatggaactcattaaccagttgcatctaattgcttggttagtgtaagatccattatttgaatagtggtttactaaaaatatcaaaccaaaaattcga |
315 |
Q |
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| T |
7740567 |
tttgatggaactcattaaccagttgcatctaattgcttggttagtgtaagatccactatttgaatagtcgtttactaaaaatatcaaagcaaaaattcga |
7740666 |
T |
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| Q |
316 |
ttcttttttataagcaaacaaaaattaggaaacgaccaaactagcctatg |
365 |
Q |
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| T |
7740667 |
ttcttttttataagcaaacaaaaattaggaaacgaccaaattagcctatg |
7740716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 7740244 - 7740373
Alignment:
| Q |
25 |
gcagcaaaaattggattgtggcac-ccactcgccgccaatgtgattatttagtttaagatgttttggtgttgaccctttagttctgaaaggaaatggatc |
123 |
Q |
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| T |
7740244 |
gcagcaaaaattggattgtggcactccactcgccgccaatgtgattatttagtttaagatgttttggtgttaaccctttagttctcaaaggaaatggatc |
7740343 |
T |
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| Q |
124 |
atagttatctggagttccatccaagataaa |
153 |
Q |
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| T |
7740344 |
atagttatctggatttccatccaagataaa |
7740373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 249
Target Start/End: Original strand, 4661991 - 4662034
Alignment:
| Q |
206 |
acaatttatctttgatggaactcattaaccagttgcatctaatt |
249 |
Q |
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| T |
4661991 |
acaattcatctttgatggaactcattaaccatttgaatctaatt |
4662034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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