View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568-Insertion-1 (Length: 1001)
Name: NF4568-Insertion-1
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568-Insertion-1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 863; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 863; E-Value: 0
Query Start/End: Original strand, 8 - 1001
Target Start/End: Original strand, 33126078 - 33127070
Alignment:
| Q |
8 |
aaaatatatatgaatctatttgaaaactatgtgtttccttcccaaaaaacacaaacacaaaagcactttcc-aagaacagttatgctaaacagataatga |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33126078 |
aaaatatatatgaatctatttgaaaactatgtgttttcttcccaaaaaacacaaacacaaaagcactttcccaagaacagttatgctaaacagataatga |
33126177 |
T |
|
| Q |
107 |
ttattacctatgaatagaataataagcaagatggtaaccatccaatcagcaaacataacattaaatgcaacaccaatgctaattccgagcattagcatag |
206 |
Q |
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|||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33126178 |
ttattaccaatgaatagaatgataagcaaaatggtaaccatccaatcagcaaacatgacattaaatgcaacaccaatgctaattccgagcattagcatag |
33126277 |
T |
|
| Q |
207 |
gctggaagagcaaagcaagatcataatctataagtggcatgtctagtgttgggtgtttaagcctcagattgtaatacacagttgacccagctgctcctgt |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33126278 |
gctggaagagcaaagcaagatcataatctataagtggcatgtctagtgttgggtgtctaagcctcagattgtaatacacagttgacccagctgctcctgt |
33126377 |
T |
|
| Q |
307 |
aatcatacctgcaataacaaagatagcagccagagtatttgaaagagctttcgaaaatgaattgggacacatcgataaaaatttagaaagaatgcatgta |
406 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33126378 |
aatcatacctgcaataacaaagatagcagccagagcatttgaaagtgctttcgaaaatgaattgggacacatcgataaaaatttagaaagaatgcatgta |
33126477 |
T |
|
| Q |
407 |
ttgtgtgtttggaaccgcattcagaagctagttcatatagcttctgaatcgcgaccagccacatgctactatttgtagcttcaccaatttcaggtccaaa |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33126478 |
ttgtgtgtttggaaccgcattcagaagctagttcatatagcttctgaatcgcagccaaccacatgctactatttgtagctgcaccaatttcaggtccaaa |
33126577 |
T |
|
| Q |
507 |
actgtatttgagacgtgagaaagataattgaaacgtaaatccaaacatcgactatatatctaacaagaatgaataaacataagatagaaatatactaaca |
606 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33126578 |
actgtatttgagacgtgagaaagataattgaaacgtaaatccaaacatcgactatacatctaacaagaatgaataaacataagatagaaatatactaaca |
33126677 |
T |
|
| Q |
607 |
cttagagagggctgtagaagactttggatcaaaaccaataatcaaagtgagcatagggataaaaattcctccacctcctacccctcctacacttcccaat |
706 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33126678 |
cttagagagggctgtagaagactttggatcaaaaccaatgatcaaagtgagcatagggataaaaattcctccacctcctacccctcctacacttcccaat |
33126777 |
T |
|
| Q |
707 |
gctgctccaaaaaatccgacaatagaccctacgacaattctccaaccaaacttcatttcctgctccacaaaaccattaccatgcatcatcaccaatttca |
806 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
33126778 |
gctgctccaaaaaatccgacaatagaccctacgacaattctccaaccaaacttcatttcctgctcaacaaaacgattaccatgcatcatcaccaatttca |
33126877 |
T |
|
| Q |
807 |
taacatcatgtcaatattataaatgacgtaataaacaataaaaaacataagtgtttgataaactcacaggccaaacacgttcataggacgactctccact |
906 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33126878 |
taacatcatgtcaatattataaatgacgtaataaacaacaaaaaacataagtgtttgataaactcacaggccaaacacgttcataggacgactctccact |
33126977 |
T |
|
| Q |
907 |
ataccagaagaaacttcnnnnnnnncatgacaacaatttctgggtttttcgtcttccaaaactcctttcgctaaactaacatgatagatcataat |
1001 |
Q |
| |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||| || ||||||||||| |||||||||||||| |
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| T |
33126978 |
ataccagaagaaactt-gtttttttcatgacaacaatttct-ggtttttcgtcttccaaaactctttcggctaaactaacgtgatagatcataat |
33127070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 143 - 321
Target Start/End: Complemental strand, 7569131 - 7568953
Alignment:
| Q |
143 |
accatccaatcagcaaacataacattaaatgcaacaccaatgctaattccgagcattagcataggctggaagagcaaagcaagatcataatctataagtg |
242 |
Q |
| |
|
|||||||||||||||||||| |||||| | ||| ||||| || ||||| ||||| |||||||||||||| |||||||| | ||||||||||||||||| |
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| T |
7569131 |
accatccaatcagcaaacatgacattacagataactccaatacttattccaagcatcagcataggctggaaaagcaaagccaaatcataatctataagtg |
7569032 |
T |
|
| Q |
243 |
gcatgtctagtgttgggtgtttaagcctcagattgtaatacacagttgacccagctgctcctgtaatcatacctgcaat |
321 |
Q |
| |
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|||||||||||||||||| | ||||||||| |||||| || |||||||| ||||| || |||||||||||||||| |
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| T |
7569031 |
gcatgtctagtgttgggtttctaagcctcatattgtagtaaacagttgataatgctgcacccataatcatacctgcaat |
7568953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 616 - 771
Target Start/End: Complemental strand, 7568728 - 7568573
Alignment:
| Q |
616 |
ggctgtagaagactttggatcaaaaccaataatcaaagtgagcatagggataaaaattcctccacctcctacccctcctacacttcccaatgctgctcca |
715 |
Q |
| |
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||||||||||||||| |||||||| ||||| ||||||| |||||||||| ||||||||| ||||||||||| ||||| ||||||||||| |||||||| |
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| T |
7568728 |
ggctgtagaagacttgggatcaaagccaatgatcaaagcaagcatagggacaaaaattccaccacctcctacacctccaacacttcccaaagctgctccc |
7568629 |
T |
|
| Q |
716 |
aaaaatccgacaatagaccctacgacaattctccaaccaaacttcatttcctgctc |
771 |
Q |
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|||||||| | ||| || || || | |||| ||||| |||| |||||||||||||| |
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| T |
7568628 |
aaaaatccaataattgatccaactataattttccaatcaaatttcatttcctgctc |
7568573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 515 - 560
Target Start/End: Complemental strand, 32663744 - 32663699
Alignment:
| Q |
515 |
tgagacgtgagaaagataattgaaacgtaaatccaaacatcgacta |
560 |
Q |
| |
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|||||||||||||||| |||| ||| |||||||||||||| ||||| |
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| T |
32663744 |
tgagacgtgagaaagacaattcaaatgtaaatccaaacattgacta |
32663699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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