View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4568-Insertion-10 (Length: 317)
Name: NF4568-Insertion-10
Description: NF4568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4568-Insertion-10 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 317
Target Start/End: Complemental strand, 35094431 - 35094122
Alignment:
| Q |
8 |
agccgctgctgagatattaggaagtggttgtcacagttcatcctataaggctgctttgttgactggccctactgttgtcgtcaaaagatacaaacaaatg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094431 |
agccgctgctgagatattaggaagtggttgtcacagttcatcctataaggctgctttgttgactggccctactgttgtcgtcaaaagatacaaacaaatg |
35094332 |
T |
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| Q |
108 |
aacaatgttaataggccagagtttcaagagcacatgagaagactgggaaggttgaatcatccgaatctccttcctctcgtagcttactactacaaaagag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094331 |
aacaatgttaataggccagagtttcaagagcacatgagaagactaggaaggttgaatcatccgaatctccttcctctcgtagcttactactacaaaagag |
35094232 |
T |
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| Q |
208 |
acgagaaacttttcatcaccgactttgttcccaatggaagcttggccgttcgccttcacggtattttcattttcacttcaactaataaacatcatagaat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35094231 |
acgagaaacttttcatcaccgactttgttcccaatggaagcttggccgttcgccttcacggtattttcattttcacttcaactaataaacatcagagaat |
35094132 |
T |
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| Q |
308 |
ataagtttaa |
317 |
Q |
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|||||||||| |
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| T |
35094131 |
ataagtttaa |
35094122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 310
Target Start/End: Original strand, 32863427 - 32863466
Alignment:
| Q |
271 |
ttttcattttcacttcaactaataaacatcatagaatata |
310 |
Q |
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| T |
32863427 |
ttttcatttttacttcaactaataaacatgatagaatata |
32863466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 310
Target Start/End: Original strand, 10195349 - 10195391
Alignment:
| Q |
268 |
gtattttcattttcacttcaactaataaacatcatagaatata |
310 |
Q |
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| T |
10195349 |
gtattttcattttcacttcaactaatagacatgataaaatata |
10195391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 309
Target Start/End: Complemental strand, 13806182 - 13806144
Alignment:
| Q |
271 |
ttttcattttcacttcaactaataaacatcatagaatat |
309 |
Q |
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||||||||||||||||||||||||||||| | ||||||| |
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| T |
13806182 |
ttttcattttcacttcaactaataaacataagagaatat |
13806144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 47364879 - 47364833
Alignment:
| Q |
271 |
ttttcattttcacttcaactaataaacatcatagaatataagtttaa |
317 |
Q |
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||||||||||||||||||||||||||||| | |||| |||| ||||| |
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| T |
47364879 |
ttttcattttcacttcaactaataaacataaaagaaaataaatttaa |
47364833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 270
Target Start/End: Original strand, 42509285 - 42509430
Alignment:
| Q |
125 |
agagtttcaagagcacatgagaagactgggaaggttgaatcatccgaatctccttcctctcgtagcttactactacaaaagagacgagaaacttttcatc |
224 |
Q |
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||||||||||||||| |||||||| | ||||||||||| ||||| ||| | ||||||| || |||||||| || | || ||| ||||| || || | |
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| T |
42509285 |
agagtttcaagagcatatgagaaggattggaaggttgaaccatcctaatttgattcctcttgttgcttactattatagaaaagaagagaagctcttggtt |
42509384 |
T |
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| Q |
225 |
accgactttgttcccaatggaagcttggccgttcgccttcacggta |
270 |
Q |
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| T |
42509385 |
accgactttgttcagaacggtagcctagctgttcgccttcatggta |
42509430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 299
Target Start/End: Original strand, 43537569 - 43537597
Alignment:
| Q |
271 |
ttttcattttcacttcaactaataaacat |
299 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
43537569 |
ttttcattttcacttcaactaataaacat |
43537597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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